Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    29   0.030
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 207 GGVCTHFGLSTNACLDYWSICQDACVKQFANVRLPVRQSVGEKPVKVDL 353
           GG        T  CL +WS      +  F N  +P+R S+ ++ +  DL
Sbjct: 379 GGYLLGIQCLTVVCLAFWSFIVSTILLWFINKIIPIRMSIHDELLGADL 427


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 219 THFGLSTNACLDYWSICQDACVKQFANVRLPVRQSVGEKPVKVDLQA 359
           TH  L T     + S C    V Q AN+R  +R   GE+P   +L A
Sbjct: 27  THMRLHTGEKPYHCSHCDRQFV-QVANLRRHLRVHTGERPYACELCA 72


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 267 KLTNSPNRHSSINQS 223
           KL+  PN H  +NQS
Sbjct: 682 KLSTDPNTHFQVNQS 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,646
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)