Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G07
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identi...    28   6.5  
At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identi...    28   6.5  
At5g53390.1 68418.m06634 expressed protein                             27   8.6  
At4g08460.2 68417.m01397 expressed protein                             27   8.6  
At4g08460.1 68417.m01396 expressed protein                             27   8.6  
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik...    27   8.6  
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik...    27   8.6  
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik...    27   8.6  
At3g28710.1 68416.m03583 H+-transporting two-sector ATPase, puta...    27   8.6  
At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    27   8.6  
At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase fa...    27   8.6  

>At5g40890.1 68418.m04965 chloride channel protein (CLC-a) identical
           to GI:1742952 (gb|AAC05742.1)
          Length = 775

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 476 LGASYVGSNSFRLSRLLCYIYLLIITNLLMIQL 574
           LGA+ + + S R++  LC I+L +  NLL++ +
Sbjct: 512 LGAASLMAGSMRMTVSLCVIFLELTNNLLLLPI 544


>At3g27170.1 68416.m03398 chloride channel protein (CLC-b) identical
           to CLC-b chloride channel protein GB:CAA96058 from
           [Arabidopsis thaliana] (J. Biol. Chem. 271 (52),
           33632-33638 (1996))
          Length = 780

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +2

Query: 476 LGASYVGSNSFRLSRLLCYIYLLIITNLLMIQL 574
           LGA+ + + S R++  LC I+L +  NLL++ +
Sbjct: 511 LGAAALMAGSMRMTVSLCVIFLELTNNLLLLPI 543


>At5g53390.1 68418.m06634 expressed protein
          Length = 486

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 77  LSSVFSI*THLFIIIIGGVSADIVLCQLNISRGFLKFATVFQHWRCM----HPLWFIDEC 244
           L +VFS+     I+ + G+ A +VL +  I    L F+ V      +    HPL +I  C
Sbjct: 366 LEAVFSMAFFKLILKVLGLKASVVLVRKVIHSTTLSFSNVVGPKEEITFHGHPLNYISPC 425

Query: 245 LFG 253
           +FG
Sbjct: 426 VFG 428


>At4g08460.2 68417.m01397 expressed protein
          Length = 274

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 355 CKSTFTGFSPTLCLTGKRTFANCFTQ 278
           C S   G  P +C TG R F+NC  Q
Sbjct: 64  CSSYHKGCRPYMCATGNR-FSNCLEQ 88


>At4g08460.1 68417.m01396 expressed protein
          Length = 274

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 355 CKSTFTGFSPTLCLTGKRTFANCFTQ 278
           C S   G  P +C TG R F+NC  Q
Sbjct: 64  CSSYHKGCRPYMCATGNR-FSNCLEQ 88


>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1240

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 548 ITNLLMIQLMRCSDQVTFRLVLSAASNLKRISVK 649
           +TNL  ++L  CS  +   L +  A+NL ++ ++
Sbjct: 808 VTNLHQLKLQNCSSLIELPLSIGTANNLWKLDIR 841


>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1214

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 548 ITNLLMIQLMRCSDQVTFRLVLSAASNLKRISVK 649
           +TNL  ++L  CS  +   L +  A+NL ++ ++
Sbjct: 808 VTNLHQLKLQNCSSLIELPLSIGTANNLWKLDIR 841


>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
           (TIR-NBS-LRR class), putative domain signature
           TIR-NBS-LRR exists, suggestive of a disease resistance
           protein., closest Col-0 homolog to RPP1-WsB
          Length = 1214

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 548 ITNLLMIQLMRCSDQVTFRLVLSAASNLKRISVK 649
           +TNL  ++L  CS  +   L +  A+NL ++ ++
Sbjct: 808 VTNLHQLKLQNCSSLIELPLSIGTANNLWKLDIR 841


>At3g28710.1 68416.m03583 H+-transporting two-sector ATPase,
           putative similar to SP|P54641 Vacuolar ATP synthase
           subunit d (EC 3.6.3.14) (Vacuolar proton pump d subunit)
           (V-ATPase 41 KDa accessory protein) {Dictyostelium
           discoideum}; contains Pfam profile PF01992: ATP synthase
           (C/AC39) subunit
          Length = 351

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 230 TKVGAYTSNVGTPSRT*ETLEKCLID-TRRYQHLLPQ 123
           TK G+Y  N  +P  T   +EKC +     Y+H+L Q
Sbjct: 52  TKYGSYLQNEPSPLHTTTIVEKCTLKLVDDYKHMLCQ 88


>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 551 TNLLMIQLMRCSDQVTFRLVLSAASNLKRISVK 649
           TNL  + + RCS  V     +  A+NLK+I+++
Sbjct: 720 TNLQRLSIERCSSLVKLPSSIGEATNLKKINLR 752


>At2g23420.1 68415.m02796 nicotinate phosphoribosyltransferase
           family protein / NAPRTase family protein contains Pfam
           domain PF04095: Nicotinate phosphoribosyltransferase
           (NAPRTase)
          Length = 557

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 270 QDACVKQFANVRLPVRQSVGEKPVKVDLQAQFY 368
           +D C+KQ  N+R    + +   P KV + A+ Y
Sbjct: 508 RDRCIKQLENMRPDHMRRLNPTPYKVSVSAKLY 540


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,073,833
Number of Sequences: 28952
Number of extensions: 251318
Number of successful extensions: 531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)