Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G06
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    26   1.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   3.1  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    25   5.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    24   7.2  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    24   9.6  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   9.6  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   9.6  

>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 FEVGPEIINCENINDIKVQLDSELENAL 305
           F++ P++    NI DI+ Q+ S  E  L
Sbjct: 16  FQIAPDVKTISNIQDIRAQIQSFREKEL 43


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 204  STGVLHFEVGPEIINCENINDIKVQLDSELENALRRDPDAKANKPAFEAKQ 356
            S   L F  G  I    NI+D  VQL+S L    R      AN+ A   KQ
Sbjct: 2632 SNPTLDFMTGILISTLGNIHDAPVQLNSILLENARGTLSEMANRVASHYKQ 2682


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 130 NFDFSPNSITMFPTIFRSAFVFNTTDLVFVSIRKSKIFWFFN 5
           NFD  P+++T        A +    D+V +  +  ++F FFN
Sbjct: 268 NFDGPPSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFN 309


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 181  YFAAPTLVACAV*VPENNFDFSPNSITMFPTIFRSAFVFNTTD 53
            ++AA  L  C   V   N + +   I+    + R+AFV +T+D
Sbjct: 1217 FYAATCLKTCISEVMAENKEPAKYLISRISDLVRAAFVLSTSD 1259


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 371 LSNKRLLRFKSGLISFCV 318
           L  K L RFKS  ++FC+
Sbjct: 61  LLEKELARFKSARLNFCI 78


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 136 ENNFDFSPNSITMFPTIFRSAFVFNTT 56
           + ++ +SP+ IT FP   +S   + TT
Sbjct: 44  KRDYTYSPSGITSFPLDLQSYTYYTTT 70


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 243 LSLGQLQNAVHRWSPSLNHIHT 178
           L+L Q+Q+ + +    LNHIHT
Sbjct: 133 LTLEQVQDIMRQIFKGLNHIHT 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,394
Number of Sequences: 5004
Number of extensions: 28513
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)