Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G06
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0805 - 23329048-23329322,23330049-23330301,23330793-233310...    28   3.0  
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877...    27   5.2  
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    27   5.2  
08_02_0037 + 11480213-11481013,11483612-11483707                       27   6.9  
05_04_0433 - 21181713-21183998                                         27   6.9  
12_01_0123 + 941923-942648                                             26   9.1  
09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420           26   9.1  
08_02_1110 + 24371934-24374763,24375034-24375518                       26   9.1  

>12_02_0805 -
           23329048-23329322,23330049-23330301,23330793-23331029,
           23332048-23332176,23334205-23334210
          Length = 299

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 81  LNIVGNIVIELGEKSKLFSGTYTAQATS 164
           L+ +GN  I LGE+ KLF+ T  A  T+
Sbjct: 42  LDFIGNGTISLGEQVKLFTKTKEAMITA 69


>08_01_0892 -
           8778097-8778236,8778390-8778486,8778568-8778747,
           8779138-8779247,8781153-8781294,8782298-8782686,
           8782752-8782834,8783524-8785244,8785894-8786040,
           8786121-8786264,8786669-8786741,8787413-8787633
          Length = 1148

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 118 SPNSITMFPTIFRSAF--VFNTTDLVFVSIRKSKIFW 14
           +P  + M  T+F +    VFNT DLV     K++ FW
Sbjct: 402 TPCKVVMSGTLFHNHVKEVFNTLDLVRPGFLKTETFW 438


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 237 EIINCENINDIKVQLDSELENALRRDPDAKA 329
           +I++C  ++D + QL  E E  LRR  D  A
Sbjct: 126 KIVDCGEVSDSQNQLKGEKEKKLRRTEDNSA 156


>08_02_0037 + 11480213-11481013,11483612-11483707
          Length = 298

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 138 GTYTAQATSVGAAKYGYDLKMDSTGVLHFEVGPEIINCEN 257
           G  TA A      K+   +  +  GVL F++   + NCE+
Sbjct: 257 GAQTAAAAKAEGEKFADSMNRNDDGVLLFDLNECVDNCED 296


>05_04_0433 - 21181713-21183998
          Length = 761

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 141 TYTAQATSVGAAKYGYDLKMDSTGVLHFEVGPE 239
           T+T   T+VG A   Y  K+   G L   V PE
Sbjct: 671 TFTRAVTNVGDAPASYSAKVKGLGGLTVSVSPE 703


>12_01_0123 + 941923-942648
          Length = 241

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 232 PTSKCSTPVESIFKSYPYFAAPTLVACA 149
           P+  C TP ESIF   P+   P  +ACA
Sbjct: 86  PSYGCQTPRESIFD--PFAPGPEELACA 111


>09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420
          Length = 217

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 80  PKYCRKHCYRIRREIKIVLRNLHSTSN 160
           P   RK C RI   I  +LRN   TSN
Sbjct: 113 PSKVRKTCIRIYTRINPILRNKTMTSN 139


>08_02_1110 + 24371934-24374763,24375034-24375518
          Length = 1104

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 204 STGVLHFEVGPEIINCENINDIKVQLDSELENALRRDPDAKANKPAFEAKQ 356
           ST  L   + PE+ NC ++ DI+V  +++L  A+  D     N   F A Q
Sbjct: 352 STNKLTGVIPPELSNCTSLTDIEVD-NNQLTGAIGVDFPRLRNLTLFYAWQ 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,090,823
Number of Sequences: 37544
Number of extensions: 156721
Number of successful extensions: 373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)