Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G06
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.047
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   3.1  
SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       27   7.1  

>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 MDSTGVLHFEVGPEIINCENINDIKVQL-DSELENALRRDPDAKAN 332
           M    ++H ++ PE I CE+IN  +++L D  L   L++D + K++
Sbjct: 464 MHGNNIVHLDLKPENIMCESINSNQIKLVDFGLARELKKDEEVKSS 509


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 171  AAKYGYDLKMDSTGVLHFEVGPEIINCENINDIKVQLDSELENALRRDPDAKANK 335
            +++YG DLK D   +   ++G EI      ND   ++D+ LENA  RD  A A +
Sbjct: 3089 SSRYG-DLK-DRLQIREAQLGEEIAKAREFNDKVREIDAFLENA--RDELASAGR 3139


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 188  ISILCSSYASCLCCVS 141
            +S+ C S  SCLCCV+
Sbjct: 1984 LSVTCGSACSCLCCVN 1999


>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 72  KADLNIVGNIVIELGEKSKLFSGTYTAQATSVGAAKYG 185
           K  L  +G  V ++G+ ++  +GTYT  AT+     +G
Sbjct: 536 KVLLRNIGGSVFQVGKNNRSDAGTYTCSATNYLGQTHG 573


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,017,734
Number of Sequences: 59808
Number of extensions: 206421
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)