Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G05
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35980.1 68418.m04333 protein kinase family protein contains ... 36 0.027
At4g32450.1 68417.m04619 pentatricopeptide (PPR) repeat-containi... 34 0.063
At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein... 34 0.083
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 34 0.083
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 33 0.11
At5g50350.1 68418.m06236 expressed protein 32 0.25
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 31 0.44
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 31 0.78
At5g46730.1 68418.m05757 glycine-rich protein 30 1.0
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 30 1.4
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 30 1.4
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 30 1.4
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 30 1.4
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 30 1.4
At1g77850.1 68414.m09072 transcriptional factor B3 family protei... 29 1.8
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi... 29 2.4
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 29 2.4
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 29 3.1
At1g77700.1 68414.m09047 pathogenesis-related thaumatin family p... 29 3.1
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 28 4.1
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 28 4.1
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 28 5.5
At3g52770.1 68416.m05814 expressed protein emm32, Streptococcus ... 28 5.5
At1g29170.1 68414.m03569 expressed protein ; expression supporte... 28 5.5
At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin; gl... 27 7.2
At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase, pu... 27 7.2
At3g56150.1 68416.m06241 eukaryotic translation initiation facto... 27 7.2
At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identic... 27 7.2
At1g29370.1 68414.m03591 kinase-related similar to putative prot... 27 7.2
At1g29350.1 68414.m03588 expressed protein 27 7.2
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 7.2
At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative simil... 27 9.6
At2g25970.1 68415.m03117 KH domain-containing protein 27 9.6
At2g05530.1 68415.m00585 glycine-rich protein 27 9.6
At1g26110.1 68414.m03186 expressed protein 27 9.6
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 35.5 bits (78), Expect = 0.027
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Frame = +2
Query: 194 GTYSASDSQSSRYHSGYNGYS-GQSSTNS---GHTYDSSGRSQGYTGQVENT---QELDS 352
G +A + R +GY+G S Q S+ S GH D+ +++GY+GQ + ++LDS
Sbjct: 659 GKMAAFSQINRRMSAGYSGGSQSQDSSLSQAQGHGMDNFYQNEGYSGQFSGSPSRRQLDS 718
Query: 353 TRGVKRYDYGGQEASGYYS----QSGSHRQSSYDHSNTNSH 463
++ GG S YS + S R + Y+ S+T H
Sbjct: 719 GVKNRKQTQGGTTLSTGYSTHNNANSSLRSNMYNPSSTAHH 759
>At4g32450.1 68417.m04619 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 537
Score = 34.3 bits (75), Expect = 0.063
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Frame = +2
Query: 188 NGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVE----NTQELDST 355
NGG S Q + Y N SGQ+ TN + + R+Q Y E Q S+
Sbjct: 58 NGGEQSLGGFQQNSYEQSLNPVSGQNPTNRFY-QNGYNRNQSYGEHSEIINQRNQNWQSS 116
Query: 356 RGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNS 460
G Y G + G+H Q DHS +S
Sbjct: 117 DGCSSYGTTGNGVPQENNTGGNHFQQ--DHSGHSS 149
>At5g49400.1 68418.m06113 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 275
Score = 33.9 bits (74), Expect = 0.083
Identities = 22/92 (23%), Positives = 41/92 (44%)
Frame = +2
Query: 203 SASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYDYG 382
S SDS++S + + +G SG+SS+ + DS + + + +++ R +R Y
Sbjct: 181 SESDSEASVFETDSDGSSGESSSEYSSSSDSEDERR-RRRKAKKSKKKQKQRKERRRRYS 239
Query: 383 GQEASGYYSQSGSHRQSSYDHSNTNSHSSDYA 478
+ S+S S S D S S ++
Sbjct: 240 SSSSESSESESASDSDSDEDRSRRKKKSKRHS 271
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 33.9 bits (74), Expect = 0.083
Identities = 21/93 (22%), Positives = 41/93 (44%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKR 370
G T++ S S+ + + ++G +ST S H+ + R GY+ ++ S
Sbjct: 98 GSTHNGHSSGSNHSSATGSTHNGHTSTGSNHSSGNGSRHNGYSSGSNHSSSTGSNHSSST 157
Query: 371 YDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSS 469
+SG + S + +HS+ ++HSS
Sbjct: 158 GSTHNNHSSG-SNHSSILGSTHKNHSSGSNHSS 189
Score = 32.7 bits (71), Expect = 0.19
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Frame = +2
Query: 236 SGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYDYGGQEASGYYSQS 415
SG N SG ST++GH+ S+ S TG N ++ G G +GY S S
Sbjct: 89 SGSNHSSGTGSTHNGHSSGSNHSSA--TGSTHNGH---TSTGSNHSSGNGSRHNGYSSGS 143
Query: 416 GSHRQSSYDHSNT-----NSHSS 469
+ +HS++ N+HSS
Sbjct: 144 NHSSSTGSNHSSSTGSTHNNHSS 166
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.5 bits (73), Expect = 0.11
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Frame = +2
Query: 185 SNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSS-----GRSQGYTGQVENTQEL- 346
S+G TY S S+ YNG SG S N TY SS G SQ V N+ +
Sbjct: 209 SSGNTYGEGSSASAGAVGDYNGSSGYGSAN---TYGSSNGGFAGDSQFGGSPVGNSSQFG 265
Query: 347 -DSTRGVKRYDYGGQEASGYYSQS 415
D+T+ +GG++ G +S
Sbjct: 266 GDNTQFTAGGQFGGEDQFGSMEKS 289
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 33.5 bits (73), Expect = 0.11
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Frame = +2
Query: 185 SNGGTYSASDSQSSRY----HSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDS 352
S GG Y + S S R + GY G SG+S G S G S Y+G D
Sbjct: 515 SGGGGYGSYGSSSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSG------GSDR 568
Query: 353 TRGVKRYDYGGQEAS-GYYSQSGSHRQSSYDHSNTNSHSSDY 475
+ G + GG G S S +SS+ +N Y
Sbjct: 569 SSGFGSFGSGGSSGGFGSDRSSQSSGRSSFGGFGSNDGKRSY 610
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = +2
Query: 173 SSALSNGGTYSASDSQSSRYHSG---YNGYSGQSSTNSGHTYDSSG-RSQGYTGQVENTQ 340
SS S GG+Y S R G Y G G SS SG + SSG S G G
Sbjct: 526 SSGRSGGGSYGGYGGSSGRSGGGGGSYGGSGGSSSRYSGGSDRSSGFGSFGSGGSSGGFG 585
Query: 341 ELDSTRGVKRYDYGG 385
S++ R +GG
Sbjct: 586 SDRSSQSSGRSSFGG 600
>At5g50350.1 68418.m06236 expressed protein
Length = 584
Score = 32.3 bits (70), Expect = 0.25
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Frame = +2
Query: 170 QSSALSNGGTYSASDSQSS-RYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQEL 346
+S+A N S SQ+ +YH GY+ S + + G DSS G +
Sbjct: 254 KSAASDNRQGLRRSFSQNPIKYHDGYSSQSSAVTDDEGK--DSSSSKHGTERIIRTVYAQ 311
Query: 347 DSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQ 499
+ KR G SGY GS R+S D+ ++ + YA Q +
Sbjct: 312 NKATPKKRESLGN---SGY----GSQRKSLDDNRGVSTSTKGYATKLQESE 355
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +2
Query: 206 ASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG-QVENTQELDSTRGVKRYDYG 382
+S S ++ Y+GY+ +++ H Y ++G S Y+G Q + +Q G + + G
Sbjct: 90 SSTSGTANVAQDYSGYTPYQTSSDPHNYSNTGYSNYYSGYQQQPSQSYPQPVGAYQ-NTG 148
Query: 383 GQEASGYYSQSGSHRQSSYDHSNTNSHSSDY 475
+ + GS+ + +S T + +DY
Sbjct: 149 APQPLSSFQNPGSY-AGTPSYSGTYYNPADY 178
Score = 30.3 bits (65), Expect = 1.0
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Frame = +2
Query: 200 YSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYT-----GQVENTQELDSTRGV 364
++ S++ S Y+SGY QS Y ++G Q + G T T
Sbjct: 115 HNYSNTGYSNYYSGYQQQPSQSYPQPVGAYQNTGAPQPLSSFQNPGSYAGTPSYSGTY-Y 173
Query: 365 KRYDY---GGQEASGYYSQ-SGSHRQSSYDHSNTNSHSSDYAVNTQS 493
DY GG +++ Y +Q +GS+ ++Y + S+ +Y T +
Sbjct: 174 NPADYQTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSN 220
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 176 SALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYT 319
S S+G Y + ++ +SG GY+ Q +NSG+++ S GYT
Sbjct: 279 SIKSDGFLYGQNPTKG---YSGPGGYNSQQQSNSGNSFGSQRGGGGYT 323
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSS-GRSQGYTGQVENTQEL----DST 355
GG Y ++ +S SG+ G G ++++ G+ + G GY G
Sbjct: 70 GGGYGGAEGYASGGGSGHGGGGGGAASSGGYASGAGEGGGGGYGGAAGGHAGGGGGGSGG 129
Query: 356 RGVKRYDYGGQEASGYYSQSG 418
G Y GG+ ASGY + +G
Sbjct: 130 GGGSAYGAGGEHASGYGNGAG 150
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +2
Query: 185 SNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGV 364
S+ G+ + + + S+ S + + +++ SG + +T+ +D + +
Sbjct: 340 SSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASL 399
Query: 365 KRYDY---GGQEASGYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQSRQ 499
K Y YY + R+ D + +S SDY + SR+
Sbjct: 400 KSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRK 447
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 200 YSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYDY 379
YS+SDS SS S + +S S +Y+SS S G + ++T RG ++
Sbjct: 227 YSSSDSYSS---SSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTRHKGRRGERK--- 280
Query: 380 GGQEASGYYSQSGSHRQSSYDHSNTNSHSS 469
+ SG + S+ S+T S SS
Sbjct: 281 -SKGRSGKKKARPDRKPSTNSSSDTESSSS 309
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = +2
Query: 200 YSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYDY 379
YS+SDS SS S + +S S +Y+SS S G + ++T RG ++
Sbjct: 227 YSSSDSYSS---SSDSDSDSESEAYSSSSYESSSSSDGKHRKRKSTTRHKGRRGERK--- 280
Query: 380 GGQEASGYYSQSGSHRQSSYDHSNTNSHSS 469
+ SG + S+ S+T S SS
Sbjct: 281 -SKGRSGKKKARPDRKPSTNSSSDTESSSS 309
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKR 370
GG D + S +G +G++ SS + G G+TG +D RG+
Sbjct: 225 GGYGLRMDGRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSP 284
Query: 371 YDYGGQE----ASGYYSQSGSHRQSSYDHSNTNSHSSDYAVN 484
Y G A GY +G S + N ++ +N
Sbjct: 285 YYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLN 326
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.9 bits (64), Expect = 1.4
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 4/102 (3%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKR 370
GG D + S +G +G++ SS + G G+TG +D RG+
Sbjct: 225 GGYGLRMDGRFSPVGAGRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSP 284
Query: 371 YDYGGQE----ASGYYSQSGSHRQSSYDHSNTNSHSSDYAVN 484
Y G A GY +G S + N ++ +N
Sbjct: 285 YYIGNTNRFGPAVGYEGGNGGGNSSFFSSVTRNLWGNNGGLN 326
>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
similar to auxin response factor 10 GI:6165644 from
[Arabidopsis thaliana]; contains Pfam profile PF02362:
B3 DNA binding domain
Length = 585
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +2
Query: 344 LDSTRGVKRYDYGGQEASGYYSQSGSHRQ------SSYDHSNTNSHSSDYAVNTQSRQIT 505
+ S+ G Y YGG E +GYYSQS ++ ++ S +++ + +R
Sbjct: 222 ISSSDGGSSY-YGGDEYNGYYSQSSVAKEDDGSPKKTFRRSGNGKLTAEAVTDAINRASQ 280
Query: 506 AMPVRVIIRP 535
+P V+ P
Sbjct: 281 GLPFEVVFYP 290
>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 579
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Frame = +2
Query: 209 SDSQSSRYHSGY-NGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYDYGG 385
S +Q S H G Y GQ+ + G G++ GQ+ + G R YGG
Sbjct: 94 SPNQWSTQHGGQIPQYGGQNPQHGGQRPPYGGQNPQQGGQMSQYGGHNPQHGGHRPQYGG 153
Query: 386 QEASGYYSQSGSHRQSSYDHSNTNSH 463
Q Y +++ + SN + +
Sbjct: 154 QRPQ-YGGPGNNYQNQNVQQSNQSQY 178
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +2
Query: 341 ELDSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSDY 475
+LD G+ +D E+S G H +DH + ++H D+
Sbjct: 284 DLDYVLGIGGFDLERIESSVNEDDKGDHHDHDHDHHHDHNHDHDH 328
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/92 (29%), Positives = 40/92 (43%)
Frame = +2
Query: 185 SNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGV 364
++GGTY+ S S G SG +S +S G+S G GQ + ST
Sbjct: 530 ASGGTYTDSTGGSPTGSPSAGGPSGSASESSMEGGTFGGQSMG--GQA-GSASYQST--- 583
Query: 365 KRYDYGGQEASGYYSQSGSHRQSSYDHSNTNS 460
Y +++G S S S + S D +N +S
Sbjct: 584 -NYQKTHSKSAGKSSVSHSSEEKSSDSANADS 614
>At1g77700.1 68414.m09047 pathogenesis-related thaumatin family
protein similar to thaumatin-like protein [Arabidopsis
thaliana] GI:2435406; contains Pfam profile PF00314:
Thaumatin family
Length = 356
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 188 NGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENT 337
NGG + QS +H+ G+SG+ +G +DS+G TG +T
Sbjct: 112 NGGGFELKPGQSIVFHAPV-GWSGRIWGRTGCKFDSTGTGTCETGSCGST 160
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTG 322
GG Y ASD GY G +G NS ++ ++G GY G
Sbjct: 125 GGGYGASDGGYGAPAGGYGGGAGGYGGNSSYS-GNAGGGGGYGG 167
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Frame = +2
Query: 191 GGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDS---SGRSQGYTGQVENTQELDSTRG 361
GG + S Y G S +S + G+ DS GR G ++ + S+RG
Sbjct: 745 GGRIGSRRSSFDSDDEDYRGSSSSASRSRGNREDSGGVGGRMGSRRGGFDDEFDRKSSRG 804
Query: 362 VKRYDYGGQEASGYYSQSGSHRQSSYDHSNTN 457
+ G G G +R D +T+
Sbjct: 805 RGSGSFRGSNRGGRGGGGGGNRHGHSDGKDTD 836
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 27.9 bits (59), Expect = 5.5
Identities = 32/127 (25%), Positives = 46/127 (36%)
Frame = +2
Query: 113 FLLMTRNPNLLYHLMQAITQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYD 292
F L +R NL L +S L N SQ+S + G G S + T D
Sbjct: 42 FSLSSRPVNLTLSL-----KSKTLRNSSPVVTFVSQTSNWAEEEEGEDG-SIGGTSVTVD 95
Query: 293 SSGRSQGYTGQVENTQELDSTRGVKRYDYGGQEASGYYSQSGSHRQSSYDHSNTNSHSSD 472
S S+ G E +E G YD Q + + Q+G+ S ++ S
Sbjct: 96 ESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRG 155
Query: 473 YAVNTQS 493
+ T S
Sbjct: 156 FGFVTMS 162
>At3g52770.1 68416.m05814 expressed protein emm32, Streptococcus
pyogenes, EMBL:SPEMM32G
Length = 67
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 98 ISKKAFLLMTRNPNLLYHLMQAITQSSALSNGGTYSASDSQSS 226
+ KKA LL N LL+ L Q ++++ +NG S +S
Sbjct: 22 LRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNNDNKSSSAS 64
>At1g29170.1 68414.m03569 expressed protein ; expression supported
by MPSS
Length = 1016
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 305 SQGYTGQVENTQELDSTRGVKRYDYGGQEASGYYSQSGS 421
S ++GQ +T+ ++ KRYD+ + + S+SGS
Sbjct: 213 SFSFSGQTSSTKTTSTSDMEKRYDFQDHHSRSFESRSGS 251
>At5g07530.1 68418.m00862 glycine-rich protein (GRP17) olesin;
glycine-rich protein 17 (GRP17) PMID:11431566; function:
pollen recognition (PMID:10655594)
Length = 543
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/79 (25%), Positives = 29/79 (36%)
Frame = +2
Query: 164 ITQSSALSNGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQE 343
I +S A S GG + G G SG + G G+S+G G +
Sbjct: 171 IKKSKAKSKGGLKAWCKKMLKSKFGGKKGKSGGGKSKFG---GKGGKSEGEEGMSSGDEG 227
Query: 344 LDSTRGVKRYDYGGQEASG 400
+ + G GG+ SG
Sbjct: 228 MSGSEGGMSGGEGGKSKSG 246
>At4g37800.1 68417.m05349 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
N-terminal partial sequence of endo-xyloglucan
transferase GI:2244732 from [Gossypium hirsutum]
Length = 293
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 34 ANSKGWXYGSGNYDLSNLEGRNFQ 105
ANSK W GS + LS +E R+++
Sbjct: 241 ANSKNWWEGSAYHQLSPVEARSYR 264
>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
identical to SP|O49160 Eukaryotic translation initiation
factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
{Arabidopsis thaliana}
Length = 900
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +2
Query: 173 SSALSNGGTYSASDSQSSRYHSGY-NGYSGQSSTNSGHTYDSSGRSQGYTGQV 328
+ A S GG Y + + G +GY G S+ + R GY G+V
Sbjct: 824 AGAASGGGGYWQDKANYGQGRQGNRSGYGGGRSSGQNGQWSGQNRGGGYAGRV 876
>At1g69770.1 68414.m08028 chromomethylase 3 (CMT3) nearly identical
to chromomethylase CMT3 [Arabidopsis thaliana]
GI:14583092, GI:14647157
Length = 839
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 389 EASGYYSQSGSHRQSSYDHSNTNSHSSDY 475
EASG S+S S + YDH N + +DY
Sbjct: 640 EASGSQSKSKSKKHVLYDHHPLNLNINDY 668
>At1g29370.1 68414.m03591 kinase-related similar to putative protein
kinase (GI:11125348) [Homo sapiens]; similar to Paired
box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
Length = 831
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 221 SSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQEL---DSTRGVKRYDYG-GQ 388
S ++ + G ST +G+ + Y +E +E+ +++ G + + Y Q
Sbjct: 406 SDARNTEFYGDEHLGSTTNGNMVHTPATGN-YDDSLETRREVLKQENSEGAQEHQYTFTQ 464
Query: 389 EASGYYSQSGSHRQ--SSYDHSNTNSHSSDYAVNTQS 493
GY ++ +Q S+YD S+TNS + + +++ S
Sbjct: 465 SEQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLS 501
>At1g29350.1 68414.m03588 expressed protein
Length = 831
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Frame = +2
Query: 221 SSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQEL---DSTRGVKRYDYG-GQ 388
S ++ + G ST +G+ + Y +E +E+ +++ G + + Y Q
Sbjct: 406 SDARNTEFYGDEHLGSTTNGNMVHTPATGN-YDDSLETRREVLKQENSEGAQEHQYTFTQ 464
Query: 389 EASGYYSQSGSHRQ--SSYDHSNTNSHSSDYAVNTQS 493
GY ++ +Q S+YD S+TNS + + +++ S
Sbjct: 465 SEQGYAYENAKQQQMNSAYDASHTNSQNQMHNLDSLS 501
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = +2
Query: 197 TYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQELDSTRGVKRYD 376
+YS ++ +SGY GY G + +G++ + GY G Y
Sbjct: 258 SYSGKANEDYSMYSGYGGYGGYGA-YAGNSMVNPAGFYGYGGGYGYGYGYGGQMFNMGYG 316
Query: 377 YGGQE--ASGYYSQSGSHRQSSYDHSNTNSHSS 469
GG SGY + + H N N+ SS
Sbjct: 317 AGGYSHMGSGYGVAAAAAYGGGKSHGNGNNGSS 349
>At5g20660.1 68418.m02454 24 kDa vacuolar protein, putative similar
to 24 kDa vacuolar protein VP24 [Ipomoea batatas]
gi|5821406|dbj|BAA83809
Length = 910
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 268 HKFRTHL**FWSISRIYGTS*KHTRIRQHTWSKTIRL 378
H F+ + ++ G + H+ I QH WS T+RL
Sbjct: 216 HGFKNSIIFLFNTGEEEGLNGAHSFITQHPWSSTVRL 252
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 27.1 bits (57), Expect = 9.6
Identities = 28/109 (25%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Frame = +2
Query: 194 GTYSASDSQSSRYHSGYNGYSGQ-SSTNSGHTYDS------SGRSQGYTGQVENTQELDS 352
G Y+AS +GY+ G S+TN D+ S G G Q+ +
Sbjct: 438 GAYNASQQSGYGQAAGYDQQGGYGSTTNPSQEEDASQAAPPSSAQSGQAGYGTTGQQPPA 497
Query: 353 TRGVKRYDYGGQEAS--GYYSQSGSHRQSSYDHSNTNSHSSDYAVNTQS 493
+ YG S GY SQ + S Y S Y + QS
Sbjct: 498 QGSTGQAGYGAPPTSQAGYSSQPAAAYNSGYGAPPPASKPPTYGQSQQS 546
>At2g05530.1 68415.m00585 glycine-rich protein
Length = 115
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +2
Query: 188 NGGTYSASDSQSSRYHSGYNGYSGQSSTNSGHTYDSSGRSQGYTGQVENTQ 340
NGG Y+ + H G +GY G Y R Y G+ TQ
Sbjct: 64 NGGGYNGGGGYNGGGHGGRHGYCRYGCCYRG--YHGCSRCCSYAGEAVQTQ 112
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 239 GYNGYSGQSSTNSGHTYDSSGRSQGYTGQ 325
GY GY G+ G+ Y G+ +G + +
Sbjct: 581 GYGGYGGRGGGGGGYGYGGRGQGRGVSNR 609
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,663,889
Number of Sequences: 28952
Number of extensions: 217091
Number of successful extensions: 864
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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