Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G03
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0YNM6 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_A5B3H2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q16QG6 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_UPI0001555860 Cluster: PREDICTED: similar to chromosome...    32   8.0  
UniRef50_Q23DH8 Cluster: DNA-directed RNA polymerase, omega subu...    32   8.0  

>UniRef50_Q0YNM6 Cluster: Putative uncharacterized protein; n=1;
           Geobacter sp. FRC-32|Rep: Putative uncharacterized
           protein - Geobacter sp. FRC-32
          Length = 391

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 81  MADDSGRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEETPADPTLTSR 224
           + + SG V F + +  I  +A E K DV+A ++  ++ET  D TL ++
Sbjct: 332 LPEQSGVVDFTELLKVIAVSAQEKKADVDASNAEEIDETSKDGTLDTK 379


>UniRef50_A5B3H2 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 299

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -3

Query: 429 SFIVNKFNTMKPAFVSDLMLNNIIIE*LKLSLFIRNIIY*NINEKPSGTLHRYPF 265
           ++ ++ FN  KP  VS L +N  II   K+S+  +  I   + EKP+  +HR+ F
Sbjct: 191 AYHLHSFNFHKPGAVSTLYVNTRIIRRYKMSILFQRCIQLKVVEKPN--VHRFHF 243


>UniRef50_Q16QG6 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 94

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +3

Query: 87  DDSGRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEETPADPTLTSRNMITAPANCPAGYQ 266
           DD   + FPDE + +K      KV  +     S EE      +   N+I AP  CP G +
Sbjct: 27  DDEAPLAFPDE-NVLKIV----KVP-QVKQEQSFEEAAPGSDIQETNIIDAPVVCPEGQK 80

Query: 267 MGSDGVCRLVFH 302
              +G CR V++
Sbjct: 81  PDHNGKCRPVWN 92


>UniRef50_UPI0001555860 Cluster: PREDICTED: similar to chromosome 6
           open reading frame 152; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to chromosome 6 open
           reading frame 152 - Ornithorhynchus anatinus
          Length = 909

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 111 PDEVDAIKEAAAENKV---DVEAGDSNSVEETPADPTLTS 221
           P   DA+KE  AE +     V+ GDS+S  E+PA P L+S
Sbjct: 463 PGSQDALKEELAEGEQVTRGVQTGDSSSPGESPARPALSS 502


>UniRef50_Q23DH8 Cluster: DNA-directed RNA polymerase, omega subunit
           family protein; n=1; Tetrahymena thermophila SB210|Rep:
           DNA-directed RNA polymerase, omega subunit family
           protein - Tetrahymena thermophila SB210
          Length = 4331

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -3

Query: 444 LNRLISFIVNKFNTMKPAFVSDLMLNNIIIE*LKLSLFIRNIIY*NINEKPSG 286
           LN+ I  I  + N     F+ DL     IIE L+++LF  NII    NEK  G
Sbjct: 797 LNQAIQSIEEQLNQKMQLFIEDLAYKERIIENLQVNLFYDNIIQ---NEKMRG 846


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,515,526
Number of Sequences: 1657284
Number of extensions: 6507084
Number of successful extensions: 17770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17764
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)