Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G03
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   2.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   4.4  

>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 96  GRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEET-PADPTLTSRNMITAPANCPAGYQMG 272
           G V   +    +K     +K  V     NS+E    A+P +T  + +    +C    + G
Sbjct: 364 GNVSIEEGQKDVKSPVTVDKEKVRQAIVNSMENLIKAEPKITKFDTMAGDGDCGTTLKRG 423

Query: 273 SDGVCRLV 296
           ++GV + V
Sbjct: 424 AEGVLKFV 431


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 69   LKRTMADDSGRVVFPDEVDAIKEAAAENKVDVEAGD----SNSVEETPADPTLTSRNMIT 236
            LK+  AD        +E   +  AAAE++ DV+A       +++E+T    T T + M+T
Sbjct: 1165 LKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQTEFSETSTPQAMLT 1224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,127
Number of Sequences: 5004
Number of extensions: 29101
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)