Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G03
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0241 - 21203528-21204040                                         32   0.36 
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    28   4.4  
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    28   4.4  
12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           28   5.9  

>02_04_0241 - 21203528-21204040
          Length = 170

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 75  RTMADDSGRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEETPADPTLTSRNMITAPANCP 254
           R    D  ++ FP  V  + + A  + VD+ A  + + E    +P L S     AP    
Sbjct: 56  RLRGRDGAQLNFPGSVGWLPQPATTDPVDIRAAAAEAAERVRREPALVSAAASAAPRRLE 115

Query: 255 AGYQMGSDG 281
            G   G DG
Sbjct: 116 LG---GGDG 121


>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 144 AENKVDVEA--GDSNSVEETPADPTLTSRNMITAPAN 248
           AEN     A  G S  V ET A PT T +NM+ AP++
Sbjct: 274 AENSSGSSANFGCSKRVFETLASPTKTIKNMLAAPSS 310


>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +3

Query: 87  DDSGRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEETPADPTLTSRNMIT 236
           D++ + + P +  A+K+    +       +S S  + PA PT+ ++  +T
Sbjct: 261 DEAAKTIIPAKAAAVKKEEESSDSSDSDSESESDSDEPAKPTIPAKRPLT 310


>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 126 AIKEAAAENKVDVEA--GDSNSVEETPADPTLTSRNMITAP 242
           +IK+ + +  VDV     D  S +ETP  P   S  + TAP
Sbjct: 274 SIKKTSGKRLVDVGRVFSDDESSDETPTSPACRSLGLSTAP 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,235,456
Number of Sequences: 37544
Number of extensions: 159845
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)