Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G03
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    27   7.0  

>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 123 DAIKEAAAENKVDVEAGDSNSVEETPADPTLTSRNMITAPANCPAGYQMGSDGV 284
           D +++A A+ K + +A  +      P++  LTS   + A +N P      ++ V
Sbjct: 345 DDLRKARADRKAEQKAEKARKRPSNPSEKKLTSAEKLMAASNIPKDVSPATNAV 398


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 DSNSVEETPADPTLTSRNMITAPANCPAG 260
           DS+ VEE    PT     M+ AP++ PAG
Sbjct: 205 DSSIVEEASTIPTNRRAPMLIAPSSTPAG 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,543,547
Number of Sequences: 27780
Number of extensions: 156624
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)