Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_G03
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein...    28   3.7  
At3g43300.1 68416.m04570 guanine nucleotide exchange family prot...    27   6.5  
At3g54320.2 68416.m06004 ovule development protein, putative sim...    27   8.6  
At3g54320.1 68416.m06003 ovule development protein, putative sim...    27   8.6  

>At5g54090.1 68418.m06734 DNA mismatch repair MutS family protein
           low similarity to SP|Q56239 DNA mismatch repair protein
           mutS {Thermus aquaticus; contains Pfam profile PF00488:
           MutS domain V
          Length = 795

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  KEQWLMIADVLYSPMRLMQSKKPLLKIKSTSK 168
           K++WL+     Y P+ L Q KK + K + T K
Sbjct: 377 KKEWLLYLPRCYHPLLLYQHKKGIRKTRETVK 408


>At3g43300.1 68416.m04570 guanine nucleotide exchange family protein
           similar to SP|Q9Y6D5 Brefeldin A-inhibited guanine
           nucleotide-exchange protein 2 {Homo sapiens}; contains
           Pfam profile PF01369: Sec7 domain
          Length = 1756

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 78  TMADDSGRVVFPDEVDAIKEAAAENKVDVEAGDSNSVEETPAD 206
           TM  +SG   FPD   AI+     +KV  +A  S+ VE + A+
Sbjct: 13  TMLKESGGKKFPDLQKAIQAYQDGSKVVTQAAPSSIVESSQAE 55


>At3g54320.2 68416.m06004 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 356

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 194 LFNRIAVSGFDVDFIFSSGFFDCINL 117
           LFN +A    ++DF+F  G  +C+NL
Sbjct: 288 LFNELAFED-NIDFMFDDGKHECLNL 312


>At3g54320.1 68416.m06003 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 427

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 194 LFNRIAVSGFDVDFIFSSGFFDCINL 117
           LFN +A    ++DF+F  G  +C+NL
Sbjct: 359 LFNELAFED-NIDFMFDDGKHECLNL 383


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,701,170
Number of Sequences: 28952
Number of extensions: 137755
Number of successful extensions: 376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)