Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_G01
(526 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family prote... 29 1.4
At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family prote... 29 1.4
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 1.4
At1g31630.1 68414.m03884 MADS-box family protein similar to MADS... 29 1.4
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 28 4.4
At1g65270.3 68414.m07401 expressed protein 27 5.8
At1g65270.2 68414.m07400 expressed protein 27 5.8
At1g65270.1 68414.m07399 expressed protein 27 5.8
At1g43780.1 68414.m05043 serine carboxypeptidase S10 family prot... 27 5.8
>At5g13800.2 68418.m01610 hydrolase, alpha/beta fold family protein
low similarity to hydrolase [Terrabacter sp. DBF63]
GI:14196240; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 484
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 100 PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 189
PT P TM + S+ D EP W F D EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189
>At5g13800.1 68418.m01609 hydrolase, alpha/beta fold family protein
low similarity to hydrolase [Terrabacter sp. DBF63]
GI:14196240; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 484
Score = 29.5 bits (63), Expect = 1.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 100 PTVGPVTMRAKRSA--DDEPLWLFKDNNEPRA 189
PT P TM + S+ D EP W F D EP A
Sbjct: 158 PTEDPTTMTEETSSSEDKEPFWGFGDKTEPWA 189
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 169 DNNEPRAPSTGDHPVLPSIIDDIKLNPN-TR----YARSLSTPNKYHGGS 303
DNN P +P P ID ++L+PN TR YA +ST + + G+
Sbjct: 595 DNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSFSDGA 644
>At1g31630.1 68414.m03884 MADS-box family protein similar to
MADS-box protein NMH 7 GI:2827300 from [Medicago sativa]
Length = 339
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 163 FKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 261
F DN + +AP +H + I D++ L+PN +Y
Sbjct: 239 FSDNIQYQAPVDFNHQIQHGIYDNLSLDPNHQY 271
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 181 PRAPSTGDHPVLPSII-DDIKLNPNTRYARS---LSTPNKYHGGSHTISKSSQSTGPTHP 348
P +PS G P PS K +P+ Y+ S LS + Y S S +S S PT P
Sbjct: 1715 PTSPSYG--PTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSP 1772
Query: 349 GYN 357
Y+
Sbjct: 1773 SYS 1775
>At1g65270.3 68414.m07401 expressed protein
Length = 292
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 256 RYARSLSTPNKYHGGSHTISKSSQSTGPT 342
+Y R L P K+ SHTI KSS+ T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221
>At1g65270.2 68414.m07400 expressed protein
Length = 292
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 256 RYARSLSTPNKYHGGSHTISKSSQSTGPT 342
+Y R L P K+ SHTI KSS+ T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221
>At1g65270.1 68414.m07399 expressed protein
Length = 292
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 256 RYARSLSTPNKYHGGSHTISKSSQSTGPT 342
+Y R L P K+ SHTI KSS+ T
Sbjct: 193 QYPRQLKLPAKWSFNSHTILKSSEQAPRT 221
>At1g43780.1 68414.m05043 serine carboxypeptidase S10 family protein
similar to serine carboxylase II-3 GB:CAA55478 GI:474392
from [Hordeum vulgare]
Length = 479
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/37 (24%), Positives = 17/37 (45%)
Frame = +1
Query: 151 PLWLFKDNNEPRAPSTGDHPVLPSIIDDIKLNPNTRY 261
P+W+F + + P G ++ + DD+ N Y
Sbjct: 380 PVWVFSGDEDSVIPLLGSRTLVKELADDLNFNTTVPY 416
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,639,254
Number of Sequences: 28952
Number of extensions: 220772
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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