Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F24
         (445 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.56 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   3.0  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.0  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.0  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   6.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   9.1  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    24   9.1  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   9.1  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 79  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 177
           V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 405 VTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +1

Query: 130  FFSQPSNGP----SGNYEPISTGPAFVDF 204
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 103 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPERYDNP 243
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y +P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 160 GNYEPI--STGPAFVDFNHPNYPPERYDNPLAR 252
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 136 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 225
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 130 FFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPERY 234
           + +Q   GPS NY   +     V+  +PNY  + Y
Sbjct: 151 YIAQLVGGPSINYSTAAMLLGAVNIGNPNYEVQNY 185


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 85   SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 195
            SD   DH V  +  P F   S+ P  + E  S  P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 124 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 225
           +P   +PS+ P       +  P   +F    YPP
Sbjct: 99  EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 105 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 200
           +C  EP S   STI+          HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,568,616
Number of Sequences: 5004
Number of extensions: 27288
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)