Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F24
         (445 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.0  
SB_44915| Best HMM Match : VWA (HMM E-Value=0)                         27   7.0  
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)                 27   7.0  
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)                   27   7.0  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   7.0  
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  

>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 196 VDFNHPNYPPERYD 237
           VD NHPNY PE Y+
Sbjct: 32  VDLNHPNYLPETYN 45


>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
          Length = 541

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 109 VIANPDPFFSQP-SNGPSGNYEPISTG 186
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282


>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
          Length = 769

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 181 TGPAFVDFNHPNYPPER 231
           T  AF D  +PN+PPER
Sbjct: 114 TNEAFFDLLNPNFPPER 130


>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
          Length = 318

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 109 VIANPDPFFSQP-SNGPSGNYEPISTG 186
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 54  VIAEPDPCLSKPCANG--GTCSPISSG 78


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 109 VIANPDPFFSQP-SNGPSGNYEPISTG 186
           VIA PDP  S+P +NG  G   PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433


>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +1

Query: 79  VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPERY 234
           +P DGN     IAN D     PSN P  ++  +    A V+     +PP  Y
Sbjct: 87  IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,598,594
Number of Sequences: 59808
Number of extensions: 204672
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)