Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F23
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55350.4 68414.m06326 calpain-type cysteine protease family i...    29   1.8  
At1g55350.3 68414.m06325 calpain-type cysteine protease family i...    29   1.8  
At1g55350.2 68414.m06324 calpain-type cysteine protease family i...    29   1.8  
At1g55350.1 68414.m06323 calpain-type cysteine protease family i...    29   1.8  
At1g77520.1 68414.m09027 O-methyltransferase family 2 protein si...    27   4.1  
At1g50980.1 68414.m05731 F-box family protein contains F-box dom...    27   5.4  
At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 / 3-keto...    26   9.4  
At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 / 3-keto...    26   9.4  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    26   9.4  
At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) / re...    26   9.4  

>At1g55350.4 68414.m06326 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 91
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.3 68414.m06325 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 91
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.2 68414.m06324 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 91
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g55350.1 68414.m06323 calpain-type cysteine protease family
           identical to calpain-like protein GI:20268660 from
           [Arabidopsis thaliana]; contains Pfam profiles: PF00648
           Calpain family cysteine protease, PF01067 Calpain large
           subunit,domain III; identical to cDNA calpain-like
           protein GI:20268659
          Length = 2151

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 180 PPLRGFALWLQTTLGAGRPVTLHGIVTSCP 91
           P ++GF LW+   L AG  ++L  I+++ P
Sbjct: 757 PRIKGFILWICVVLFAGSVISLGAIISAKP 786


>At1g77520.1 68414.m09027 O-methyltransferase family 2 protein
           similar to caffeic acid 3-O-methyltransferase GB:O23760
           [Clarkia breweri], [SP|Q00763] [Populus tremuloides]
          Length = 381

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 282 YLSPCSLVALQP*YPVSPFCTPLMTRPLSLTVA 184
           +LSPC +    P  P +P    L+ R LSL V+
Sbjct: 66  WLSPCEIACSLPTKPTNPEAPVLLDRMLSLLVS 98


>At1g50980.1 68414.m05731 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 213 MTRPLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCP 91
           +T  +  T+ +P LR   L +  T G  RP  +HG V + P
Sbjct: 164 LTNVMIFTIDVPTLR--ILSIDNTSGKSRPKGVHGFVINTP 202


>At5g48880.2 68418.m06047 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 457

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 56  EQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVSD-SGLVI 214
           E K EK IVV     V     +  L   K V+  N    +G  + +SD +G V+
Sbjct: 250 ETKAEKAIVVSVDDGVRPNSNMADLAKLKTVFKQNGSTTAGNASQISDGAGAVL 303


>At5g48880.1 68418.m06046 acetyl-CoA C-acyltransferase 1 /
           3-ketoacyl-CoA thiolase 1 (PKT1) identical to
           3-keto-acyl-CoA-thiolase 1 [Arabidopsis thaliana]
           GI:3169568
          Length = 414

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 56  EQKPEKVIVVKHGQDVTIPCKVTGLPAPKVVWSHNAKPLSGGRATVSD-SGLVI 214
           E K EK IVV     V     +  L   K V+  N    +G  + +SD +G V+
Sbjct: 207 ETKAEKAIVVSVDDGVRPNSNMADLAKLKTVFKQNGSTTAGNASQISDGAGAVL 260


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 120 TLHGIVTSCPCFTTITFSGF 61
           T+   VTSCP  TT+   GF
Sbjct: 538 TVEAFVTSCPSLTTLKLVGF 557


>At1g02340.1 68414.m00180 long hypocotyl in far-red 1 (HFR1) /
           reduced phytochrome signaling (REP1) / basic
           helix-loop-helix FBI1 protein (FBI1) / reduced
           sensitivity to far-red light (RSF1) / bHLH protein 26
           (BHLH026) (BHLH26) identical to SP|Q9FE22 Long hypocotyl
           in far-red 1 (bHLH-like protein HFR1) (Reduced
           phytochrome signaling) (Basic helix-loop-helix FBI1
           protein) (Reduced sensitivity to far-red light)
           [Arabidopsis thaliana]
          Length = 292

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 204 PLSLTVALPPLRGFALWLQTTLGAGRPVTLHGIVTSCPCF 85
           P    ++ P     +L+L T+  A  P +LHG+V   P F
Sbjct: 242 PPFTNISFPHSSSQSLFLTTSSPASSPQSLHGLVPYFPSF 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,829,963
Number of Sequences: 28952
Number of extensions: 169986
Number of successful extensions: 443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)