Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F22
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW 190 4e-49
At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB) 190 6e-49
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si... 184 2e-47
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi... 32 0.20
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 30 0.80
At2g35200.1 68415.m04317 expressed protein 30 0.80
At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.2
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 28 4.3
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 27 5.7
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 27 5.7
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 27 7.5
At5g04700.1 68418.m00478 hypothetical protein 27 7.5
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 7.5
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 7.5
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 7.5
>At1g29965.1 68414.m03664 60S ribosomal protein L18A (RPL18aA) JRW
Length = 178
Score = 190 bits (464), Expect = 4e-49
Identities = 85/172 (49%), Positives = 121/172 (70%), Gaps = 3/172 (1%)
Frame = +1
Query: 7 LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKE 186
L +Y+V+GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G++++I E
Sbjct: 6 LHQYQVVGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINE 65
Query: 187 IPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQI 366
I EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQI
Sbjct: 66 IFEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQI 125
Query: 367 IKVEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPNTY 513
IK + A+ C+R KQFH SKI FPL R K TF +PN +
Sbjct: 126 IKTATVPASLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTFKANKPNLF 177
>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
Length = 178
Score = 190 bits (462), Expect = 6e-49
Identities = 85/170 (50%), Positives = 119/170 (70%), Gaps = 3/170 (1%)
Frame = +1
Query: 13 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 192
+Y+V+GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIY 67
Query: 193 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 372
EK+P IKNFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 373 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPNTY 513
+ A C+R KQFH SKI FPL R K T+ +PN +
Sbjct: 128 TATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLF 177
>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
similar to GB:CAA08791 from [Podocoryne carnea]
Length = 178
Score = 184 bits (449), Expect = 2e-47
Identities = 82/170 (48%), Positives = 117/170 (68%), Gaps = 3/170 (1%)
Frame = +1
Query: 13 EYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIP 192
+Y+V+GR LP+E++ P +Y+M+++ + + AKS+FWYF+R+LKK KK+ G++++I EI
Sbjct: 8 QYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIF 67
Query: 193 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 372
EK+P IKN+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R IQIIK
Sbjct: 68 EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIK 127
Query: 373 VEVIKAAACRRPQVKQFHTSKIGFPL---PKRVHQYKRLNTFAYKRPNTY 513
+ A C+R KQFH SKI FPL R K T+ +PN +
Sbjct: 128 TATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLF 177
>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 867
Score = 32.3 bits (70), Expect = 0.20
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 58 KPPLYKMRIFSPDPIVAKSRFWYFL-RQLKKFKKTTGEIVSIKEIPEKSPV 207
+PP++ R +P PI +++RF + Q + +T E +S E P K+ V
Sbjct: 11 RPPIFLHRFINPKPISSQTRFLHPPDNQSRDISDSTTETISTLEFPHKTSV 61
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 30.3 bits (65), Expect = 0.80
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +1
Query: 139 LKKFKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGVHN-MYREYRD 285
+++F+K E+++ +E+PE + PV + +G W + + G+ + M RE+ D
Sbjct: 679 VEEFEKDKQEVLN-QEVPEPEKPVLVPGWGQWTNVQKKRGLPSWMVREHED 728
>At2g35200.1 68415.m04317 expressed protein
Length = 201
Score = 30.3 bits (65), Expect = 0.80
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 82 IFSPDPIVAKSRFWYFLRQLKKFKKT 159
+FSP P+ +K WYF +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185
>At1g68740.1 68414.m07857 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 784
Score = 28.3 bits (60), Expect = 3.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 209 LTGLFSGISLMDTISPVVFLNFFNCLKKYQK 117
LT LF G++ + T + L F N LKK+ K
Sbjct: 293 LTELFKGLNYLKTYRNLNILAFMNILKKFDK 323
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -2
Query: 222 KVLNLNRTLFWNFLDGYNFTSSLFELLQLPQEIPETRFCHNRIRRENP 79
K+ + TL DG FT S+ E L L Q + R NR+ + P
Sbjct: 215 KLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIP 262
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.5 bits (58), Expect = 5.7
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)
Frame = +1
Query: 31 RKLPSESEPKPPLYKMRIF-----SPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPE 195
RK +P+ L+ ++ F S V K+ + F+ + K ++ S+K
Sbjct: 45 RKTFGTGKPETLLHHLKFFARSKESEIEEVCKAHYQDFIHAVDDLKSLLSDVESLKSALS 104
Query: 196 KSPVKIKNFGIWLRYESRSGVH-NMYREYRDLSVGGAVTQCYRDMGARHRARAH 354
S K+++ L S V + DL++G AVT C R M RA H
Sbjct: 105 DSNSKLQSVAAPLLSSLDSLVEAQTVSKNVDLAIG-AVTHCVRVMELVSRANQH 157
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 34 KLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTT 162
+LPS SEP PP R F D V+ + W R KK TT
Sbjct: 149 RLPSLSEPSPP--SKRFF--DSPVSPNDSWAICRIFKKTNTTT 187
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +1
Query: 148 FKKTTGEIVSIKEIPE-KSPVKIKNFGIWLRYESRSGV-HNMYREYRD 285
F+K E+++ +E+PE + PV++ +G W +++ G+ + RE+ +
Sbjct: 665 FEKDKQEVLN-QEVPEPEKPVQVAGWGHWTNNQNKRGLPSRIVREHEE 711
>At5g04700.1 68418.m00478 hypothetical protein
Length = 669
Score = 27.1 bits (57), Expect = 7.5
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Frame = +1
Query: 163 GEIVS-IKEIPEKSPVKIKNFGIWLRY-ES-------RSGVHNMYREYRDLSVG---GAV 306
G+ VS IKE+PE+ V I + + ES R N+Y EY LS G G V
Sbjct: 34 GDSVSPIKEVPEEEEVPNDPVNIQIPFIESALSTSRLRGKNTNVYYEYIQLSQGISQGRV 93
Query: 307 TQCYRDMGARHRARAHS-IQIIKVEVIKAAACRRPQV 414
+ +D H I + + ++KA AC +P++
Sbjct: 94 -EIVKDFLNHHPDSVDEWINLYETPLLKACACGKPEI 129
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 434 LLVWNCLTCGRRHAAALITSTLMIC 360
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 434 LLVWNCLTCGRRHAAALITSTLMIC 360
L+VWN LT + HA L + +M C
Sbjct: 27 LIVWNALTSQKTHAIKLPCAWVMTC 51
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 434 LLVWNCLTCGRRHAAALITSTLMIC 360
L+VWN LT + HA L + +M C
Sbjct: 89 LIVWNALTSQKTHAIKLPCAWVMTC 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,303
Number of Sequences: 28952
Number of extensions: 227644
Number of successful extensions: 714
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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