Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F20
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   149   4e-37
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   3.1  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   5.3  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   7.1  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  149 bits (360), Expect = 4e-37
 Identities = 82/198 (41%), Positives = 108/198 (54%), Gaps = 1/198 (0%)
 Frame = +1

Query: 52  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVP-AASLPHVLRWYSHI 228
           M   D+ +  GL +LN +L ++S++ GY PSQAD  VF+ VG  P  A  P+  RWY  I
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 229 ASYTPAERKTWSEGVSXXXXXXXXXXXXXXSNXXXXXXXXLFGSGXXXXXXXXXXXXXXX 408
           A+Y  A     ++ VS               +        LFGS                
Sbjct: 61  ATYDLATLPGTAKEVSAYGPEGAAAAEEDEID--------LFGS-DEEEDPEAERIKAER 111

Query: 409 LKAYADKKSKKPALIAKSSIILDVXPWDDETDMKEMENQVRTIEMDGLLWGASKLVPVGY 588
           +  Y  KK+ KP  + KS + LDV PWDDET M E+E  VR+I+MDGL+WG SKLVPVG+
Sbjct: 112 VAEYNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGF 171

Query: 589 GINKLQIMCVIEDDKVSV 642
           G+NK QI  V+EDDKVS+
Sbjct: 172 GVNKFQINLVVEDDKVSL 189


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -2

Query: 544 PFQLCALGFPFLSYLSHHP--MVXHQGL*RTLQ 452
           P+QL  L + +L + +HHP  +    GL +T+Q
Sbjct: 558 PYQLKGLNWLYLRWYTHHPCILADEMGLGKTVQ 590


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 424 DKKSKKPALIAKSSIILDVXPWDDETDMKEME 519
           DK+S  P LIA++ +  ++   D+   +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  HFSIRNLIYSSKPHGPAT 1
           H  I +L+Y + PHGP +
Sbjct: 262 HHKIEDLVYHAYPHGPCS 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,368
Number of Sequences: 5004
Number of extensions: 42154
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)