Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F20
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             192   2e-49
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               49   3e-06
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 39   0.004
SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)                 29   4.3  
SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)             28   7.5  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  192 bits (468), Expect = 2e-49
 Identities = 98/199 (49%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
 Frame = +1

Query: 52  MALGDVKTAQGLNELNQYLAERSYVSGYTPSQADIKVFEQVGKVPAASLPHVLRWYSHIA 231
           M  GD+K+  GL+ LN +L ERSY+ GY PSQAD  VFE +   P ASLPH LRWY+HI 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 232 SYTPAERKTWSEGVSXXXXXXXXXXXXXX---SNXXXXXXXXLFGSGXXXXXXXXXXXXX 402
           SY   ++    E  S                 ++        LFGS              
Sbjct: 61  SYGEGKQNFPGEKKSVESFGPAGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQ 120

Query: 403 XXLKAYADKKSKKPALIAKSSIILDVXPWDDETDMKEMENQVRTIEMDGLLWGASKLVPV 582
             LKAY +KK+KK  +IAKS+I+LDV PWDDETDM EME  VR+I+ DGLLWGASKLVP+
Sbjct: 121 ERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGASKLVPL 180

Query: 583 GYGINKLQIMCVIEDDKVS 639
            YGI KLQI  V+EDDK+S
Sbjct: 181 AYGIKKLQITVVVEDDKIS 199


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +1

Query: 133 YTPSQADIKVFEQVGKVPAASLPHVLRWYSHIASY 237
           Y PSQAD  VFE +   P ASLPH LRWY+HI SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
 Frame = +1

Query: 409 LKAYADKKSKKPALIAKSS---IILDVXPWDDETDMKEMEN--QVRTIEMDGLLWGASKL 573
           +KA+A K  +KPA   K       +D+   DDE + +E     + R  E +      +KL
Sbjct: 60  IKAFAKKPEEKPAAAKKEDDDDSDIDLFGSDDEEEAEEARQLREKRLAEYNAKK-ATTKL 118

Query: 574 VPVGYGINKLQIMCVIEDDKVS 639
           V + YG+ KLQI CVIED KVS
Sbjct: 119 VEIAYGLKKLQITCVIEDAKVS 140


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = +1

Query: 568 KLVPVGYGINKLQIMCVIEDDKVS 639
           KLV + YG+ KLQI CVIED KVS
Sbjct: 2   KLVEIAYGLKKLQITCVIEDAKVS 25


>SB_30461| Best HMM Match : zf-C2H2 (HMM E-Value=0.064)
          Length = 197

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 409 LKAYADKKSKKPALIAKSSIILDVXPWDDETDMKE 513
           LK  AD   KKP  +    +I D  P D+E + KE
Sbjct: 76  LKPAADVTPKKPKKVKHKPVIADPVPVDEEEEPKE 110


>SB_52488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 302 VGLAPAVNGLTPSDQVLRSAGVYDAMWLYH 213
           +G+ PA+ GL P+  +  + G+Y A+ LYH
Sbjct: 47  LGIYPALFGLYPTLGLYPTLGLYPALGLYH 76


>SB_58477| Best HMM Match : Ion_trans (HMM E-Value=1.2e-25)
          Length = 578

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 253 CVQQGCTMRCGCTTSKHEVGWQQVLCR 173
           C  + C   CGCT+ +    W +  CR
Sbjct: 552 CFPECCMNACGCTSGQQHFCWLKFRCR 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,956,627
Number of Sequences: 59808
Number of extensions: 318035
Number of successful extensions: 698
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)