Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F18
(558 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 246 1e-66
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 30 0.27
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 1.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 1.9
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 27 1.9
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 1.9
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 3.3
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 3.3
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 26 4.3
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.7
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 25 5.7
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 25 5.7
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 7.5
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 7.5
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 7.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 10.0
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 10.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 10.0
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 246 bits (603), Expect = 1e-66
Identities = 108/185 (58%), Positives = 149/185 (80%)
Frame = +2
Query: 2 ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
E ++S L+ AYA+T +L ++E F+ G N AD++ +GD CF+ K Y AAKL+Y+++SN++
Sbjct: 1162 EPDVDSALLIAYAKTNQLTEMETFLIGSNVADVKAVGDECFESKNYEAAKLMYSSISNWS 1221
Query: 182 RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
LA TLV+L E+QGAVD ARKANS + WK+V AC+D EFRLAQ+CGL+++VHA+EL
Sbjct: 1222 MLATTLVYLGEYQGAVDCARKANSIKVWKQVGTACIDKREFRLAQICGLNLIVHAEELPG 1281
Query: 362 LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
LI Y++RG+F+E+ISL+EA LGLERAHM +TELAILY+KYKP +M EHL+LFW R+N+
Sbjct: 1282 LIRLYEERGYFEEVISLMEAGLGLERAHMAFYTELAILYAKYKPERMMEHLKLFWGRLNM 1341
Query: 542 PKVLR 556
KV+R
Sbjct: 1342 AKVIR 1346
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 29.9 bits (64), Expect = 0.27
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 38 ARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFARLAITLVHLKEF 217
A + D +E + P IQKI + K+++AAK YN+++ LA+ LVH+ +
Sbjct: 420 AEASKTIDYKEDETAPTERRIQKILEYDILSKLFSAAK-HYNSLNGL--LAMILVHMANY 476
Query: 218 QGAVDSARKANSTRTWKEVCF 280
+ A + + + CF
Sbjct: 477 KLARRKLVQIGALKFLTRQCF 497
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 128 DKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAVDSARKANSTRTWKEVC 277
D+ Y Y N + + ++L HLK F+ +++S ++ +K VC
Sbjct: 38 DRFYGLTN--YGNTCYVSSVLVSLYHLKPFRDSLNSYPLPSAPPNFKSVC 85
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 405 SVYWKRHWAWNELTWACSQSWRYS 476
S+ HWA EL W+CS+ +S
Sbjct: 316 SIVSTMHWASTELLWSCSKDGIFS 339
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -3
Query: 259 PSRVSFPCAVDGTLEFLEVHKRNGQPCKVADIVVQQFGRVVHLVVEAPVSDLLYVRMVRS 80
P V+ P + GT+ +E+ + G K DI+ + +V+ AP S +L V
Sbjct: 1114 PGHVAAP--MSGTI--VEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQ 1169
Query: 79 GDEL 68
GD +
Sbjct: 1170 GDSV 1173
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 1.9
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -3
Query: 169 DIVVQQFGRVVHLVVE--APVSDLLYVRMVRSGDELFEVG 56
DIVV GR +HL VE +S + YV + D LFE+G
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEYV-VFDEADRLFEMG 229
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -3
Query: 223 TLEFLEVHKRNGQPCKVADIVVQQFGRVVHLVVEAPVSDLLYVRMVRSGDELFEV 59
+L L +++N +VA V+ F R++ + E + DLL + + GD EV
Sbjct: 1405 SLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEV 1459
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 344 ADELEDLINYYQDRGHFDELISLLEAALGLERAHMG 451
ADE E+ Y ++ H + + E + LER H G
Sbjct: 104 ADEAENEETSYSEQNHTENTEEIAEESRPLERTHSG 139
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 2 ESYIESELIYAYARTGRLADLEEFISGPNHAD 97
E Y +++ Y R R A FI+ P HAD
Sbjct: 70 EKYFSIDILRFYIRCTRCAAEITFITDPKHAD 101
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.7
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = -1
Query: 474 SIASSVNMPM*ARSRPNAASNKLISSSKCPRS***LIRSSNSSA 343
S++SS + + A S AAS L SSS P S ++ SS+++A
Sbjct: 13 SLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATA 56
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 61 PRRVHLRTEPCGHTKDRRP 117
PR + R + CGHT RP
Sbjct: 105 PRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 25.4 bits (53), Expect = 5.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 61 PRRVHLRTEPCGHTKDRRP 117
PR + R + CGHT RP
Sbjct: 105 PRATNCRKKKCGHTNQLRP 123
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 184 PCKVADIVVQQFGRVVHLVVEAPVSDLLYVR 92
P KV+DI+++QF H+++ YVR
Sbjct: 187 PKKVSDILIEQFFFRCHMLINVLHRPTFYVR 217
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 206 LKEFQGAVDSARKANSTRTWKEVC 277
L+EF S +++ R WKE C
Sbjct: 120 LEEFTACTSSLKQSKQKRLWKEHC 143
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 340 NDDMKATHLSQSELARVDASEANLL 266
N D KATH+ + + +D E NLL
Sbjct: 629 NLDGKATHIIKESIENLDIPEENLL 653
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 24.6 bits (51), Expect = 10.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 401 LISLLEAALGLERAHMGMFTELA-ILYSKYKPAKMREHLELFWSRVNIPKVLR 556
LI LL + L + + +++ L KY P + E L L R++IP LR
Sbjct: 1038 LIELLFPLMKLSDPKIQYYVKVSNALSEKYLPQGVLELLVLLQKRIDIPSSLR 1090
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 143 RCTSCRRSTGLRSFVCPHGS 84
R TS RS G +SFVCP S
Sbjct: 410 RKTSVPRSPGGKSFVCPECS 429
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 10.0
Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 314 QMCGLHIVVHADELEDLINYYQDRGHFDELISLLE--AALGLERAHMG 451
+M ++ H +E+++NY + GH+ ++ ++ A G + G
Sbjct: 1069 KMGSFTMLCHKQPIEEILNYASNFGHYKAIVQSVKYLAETGTHQVQQG 1116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,671
Number of Sequences: 5004
Number of extensions: 41332
Number of successful extensions: 130
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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