Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F18
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 264 3e-71
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 264 3e-71
01_06_0141 - 26905855-26906928 31 0.82
08_02_0370 - 16333471-16333526,16333821-16333912,16334553-163346... 29 2.5
07_03_0867 - 22149414-22149507,22149859-22150019 28 4.4
01_05_0602 + 23577328-23579805 28 4.4
02_01_0114 - 857835-859464,860403-860444,860530-860537 28 5.8
01_06_0508 - 29897536-29897982 28 5.8
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 27 7.7
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 27 7.7
02_04_0078 + 19507705-19508169 27 7.7
02_02_0147 - 7176478-7176832,7177006-7177334 27 7.7
01_06_0827 + 32260313-32260525,32261862-32262716 27 7.7
>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 264 bits (647), Expect = 3e-71
Identities = 115/185 (62%), Positives = 159/185 (85%)
Frame = +2
Query: 2 ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
E ++ ELI+AYA+ RL+D+EEFI PN A++Q +GDR +D+++Y AAK++Y +SN+A
Sbjct: 1180 EPKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIYAFISNWA 1239
Query: 182 RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL+I+V D+LE+
Sbjct: 1240 KLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEE 1299
Query: 362 LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
+ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ EH++LF +R+NI
Sbjct: 1300 VSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNI 1359
Query: 542 PKVLR 556
PK++R
Sbjct: 1360 PKLIR 1364
>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 264 bits (647), Expect = 3e-71
Identities = 115/185 (62%), Positives = 159/185 (85%)
Frame = +2
Query: 2 ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
E ++ ELI+AYA+ RL+D+EEFI PN A++Q +GDR +D+++Y AAK++Y +SN+A
Sbjct: 1180 EPKVDGELIFAYAKIDRLSDIEEFILMPNVANLQNVGDRLYDEELYEAAKIIYAFISNWA 1239
Query: 182 RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
+LA+TLV LK+FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL+I+V D+LE+
Sbjct: 1240 KLAVTLVKLKQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIVQVDDLEE 1299
Query: 362 LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
+ YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+P K+ EH++LF +R+NI
Sbjct: 1300 VSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNI 1359
Query: 542 PKVLR 556
PK++R
Sbjct: 1360 PKLIR 1364
>01_06_0141 - 26905855-26906928
Length = 357
Score = 30.7 bits (66), Expect = 0.82
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 119 CFDDKMYNAAKLLYNNV---SNFARLAITLV--HLKEFQGAVDSARKANSTRTWKEVCFA 283
C D Y AA +L + RLA+T++ H+++ + + +R T TW++V +A
Sbjct: 274 CAVDLRYAAAAVLGQPELARAGLKRLALTVMGAHMEKEKN-ITKSRWGEPTLTWEQVNYA 332
Query: 284 CVDA 295
C+DA
Sbjct: 333 CIDA 336
>08_02_0370 -
16333471-16333526,16333821-16333912,16334553-16334671,
16335152-16335226,16335328-16335393,16335507-16335563,
16335640-16335689,16335774-16335944,16337057-16337183,
16337658-16338017
Length = 390
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -3
Query: 259 PSRVSFPCAVDGTLEFLEVHKRNGQPCKVADIVVQQFGRVVHLVVEA 119
P+R++ + L F E+ + +GQPC + Q+FG + ++++ A
Sbjct: 322 PARMAIAAGMSDGLLFTELDRPDGQPC----VEAQEFGLIRNMLIAA 364
>07_03_0867 - 22149414-22149507,22149859-22150019
Length = 84
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 104 FVCPHGSVRR*TLRGRPAVRCGRKRKSVPIRC 9
F+C G+V R A RCGR R+ P RC
Sbjct: 51 FLCRRGAVHREA--ASTAQRCGRYRQGSPCRC 80
>01_05_0602 + 23577328-23579805
Length = 825
Score = 28.3 bits (60), Expect = 4.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 2 ESYIESELIYAYARTGRLADLEEFISGPNHADI 100
++++ L+ Y + GRLAD G H D+
Sbjct: 94 DAFLHDSLLNMYCKCGRLADARSVFDGMPHRDV 126
>02_01_0114 - 857835-859464,860403-860444,860530-860537
Length = 559
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 206 LKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIV 337
L+E + +D W+ + AC+ G RLA++ G+ I+
Sbjct: 418 LEEAEALIDHMDVEPDIVIWRSLLSACLAHGNDRLAEIAGMEII 461
>01_06_0508 - 29897536-29897982
Length = 148
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 143 RCTSCRRSTGLRSFVCPHGSV 81
RC +C RS GL F C G+V
Sbjct: 88 RCAACGRSVGLMGFECRCGAV 108
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 IGDRCFDDKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAV-DSARKANS 253
+GD CF +K N+ SN AR+ + + G V DS RK N+
Sbjct: 219 MGDPCFPEKFAWEGVKCSNSSSNTARIISLNLSCNQLNGPVPDSLRKNNT 268
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 190 HYACAPQGIPGCRRQRK 240
HYAC P +P CRR+R+
Sbjct: 73 HYACRPTSLP-CRRRRR 88
>02_04_0078 + 19507705-19508169
Length = 154
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 143 RCTSCRRSTGLRSFVCPHG 87
RC SCR+ GL F C G
Sbjct: 93 RCASCRKRVGLTGFACRCG 111
>02_02_0147 - 7176478-7176832,7177006-7177334
Length = 227
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 380 DRGHFDELISLLEAALGLERAHMGMFTELA 469
D G+ EL++++ AA+G R H G TE A
Sbjct: 69 DGGNGVELVAMVAAAVGRRRQHGGWSTETA 98
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 143 RCTSCRRSTGLRSFVCPHGSVRR*TLRGRPAVRCG 39
RC SC++ GL F C G+ T R CG
Sbjct: 294 RCASCKKKVGLLGFACRCGATYCGTHRYPEKHACG 328
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,444
Number of Sequences: 37544
Number of extensions: 324606
Number of successful extensions: 1175
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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