Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F18
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)             336   9e-93
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)               33   0.21 
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)                      30   1.1  
SB_51106| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)                      28   4.5  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      27   7.9  
SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score =  336 bits (825), Expect = 9e-93
 Identities = 152/185 (82%), Positives = 173/185 (93%)
 Frame = +2

Query: 2    ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
            ++++E+ELI+AYART RLA+LEEFISGPNHA I ++GDRC+D  MY+AAKLLYNN+SNFA
Sbjct: 991  DTFVETELIFAYARTNRLAELEEFISGPNHAQIGQVGDRCYDAGMYDAAKLLYNNISNFA 1050

Query: 182  RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
            +LA TLVHL E+Q AVD ARKANST+TWKEVCFACVD GEFR+AQMCGLHIVVHADELE+
Sbjct: 1051 KLASTLVHLGEYQAAVDGARKANSTKTWKEVCFACVDGGEFRMAQMCGLHIVVHADELEE 1110

Query: 362  LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
            LINYYQ+RG F+ELI L+EAALGLERAHMGMFTELAILYSKYKP+KMREHLELFWSRVNI
Sbjct: 1111 LINYYQNRGFFEELIGLMEAALGLERAHMGMFTELAILYSKYKPSKMREHLELFWSRVNI 1170

Query: 542  PKVLR 556
            PKVLR
Sbjct: 1171 PKVLR 1175


>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
          Length = 1066

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = +2

Query: 200 VHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ 379
           + L E + A + A +A   R WK++    +   +F+LAQ C LH   HA +   L+    
Sbjct: 546 IQLGELRTAYEIAMEAEVERKWKQLAELAISKCQFQLAQEC-LH---HAQDFGGLLLLAT 601

Query: 380 DRGHFDELISLLEAA 424
             G  D +  L   A
Sbjct: 602 SSGDADMITRLAVTA 616


>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1080

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 146 PRCTSCRRSTGLRSFVCPHGSVRR*TLRGRPAVRCGRKRK 27
           P+C  C ++   +S +  HG + R   RGRP  R   K++
Sbjct: 487 PKCPICDQTFDTQSGLDVHGRIHRIRKRGRPPTRSNSKKQ 526


>SB_51106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 568

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 28  LRLRP-HRTAGRPRRVHLRTEPCGHTKDRRPVLRR 129
           L LRP HR A RP     R+EP  H+K  RP  RR
Sbjct: 115 LSLRPRHRPAQRPLPADRRSEPLSHSK--RPPPRR 147


>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 250 VSFPCAVDGT-LEFLEVHKRNGQPCKVADIVVQQFGRVVH 134
           +  PCA  G  +  + +H  N  PC      V +FG  VH
Sbjct: 75  IRHPCARQGIHVRIVSIHVHNRYPCAQLGSNVHEFGTYVH 114


>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
          Length = 566

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 28  LRLRPH-RTAGRPRRVHLRTEPCGHTKDRRPVLRR 129
           LRLRP  R A RP     R+EP  H+K  RP  RR
Sbjct: 105 LRLRPRQRPAQRPLPADRRSEPLSHSK--RPPPRR 137


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 45  PDGWPTSKSSSPDRTMRTYKRSETG-ASXXXXXXXXXXXXXMSATLHGWPLRLCTSRNSR 221
           P G P S SSS DRT         G  S              +++L+G      TSR S+
Sbjct: 297 PPGSPVSSSSSSDRTKSPSPAKNQGKLSERVKSTTPGSSASSTSSLNG--TSSLTSRKSQ 354

Query: 222 VPSTAQG 242
            PS + G
Sbjct: 355 SPSKSSG 361


>SB_14640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 287 VDAGEFRLAQMCGLHIVVHADELEDLINYY 376
           ++A E R   +CG+   +  DEL+D++ YY
Sbjct: 238 IEASELR-DLLCGMEKKIPEDELQDMLRYY 266


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -3

Query: 262 CPSRVSFPCAVDGTLEFLEVHKRNGQPCKVA-DIVVQQFG 146
           CP R  + C  DG   F E H  +   C+ + DI V+  G
Sbjct: 295 CPGRADYVCGSDGNSYFTECH-MDATACRESRDITVKHKG 333


>SB_3123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +2

Query: 236 ARKANSTRTWKEVCFACVDAGEFRLAQMCGL---HIVVHADELEDLINYYQD--RGHFD 397
           +R  N TRT  E C A ++ G+  +A   GL    ++VH  +  D I    D   GH D
Sbjct: 58  SRSGNPTRTCFEECVAALEGGKHGIATSSGLAATMLLVHTLKSGDHIACIDDVYGGHSD 116


>SB_49645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 469

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +2

Query: 2   ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRC--FDDKMYNAAKLLYNNVSN 175
           ++ +E +   A  +T  L +         HA  ++  D+     DK++N   LLY +  +
Sbjct: 207 QAQLEEQTKTAKEQTDALLEDRRVRMEEQHAQRERDADKIKTLQDKLHNTQSLLYESTKD 266

Query: 176 FARLAITLVHLKEFQGAVDSAR 241
           F  L   L   KE    VD  R
Sbjct: 267 FLELKYEL-RAKERHWMVDRDR 287


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 337  DDMKATHLSQSELARVDASEA-NLLPCPSRVSFPCAVDGTLEFLEVHKR 194
            D + A+ +S  EL R  A+ A   +P PS+       +GT+ F++V +R
Sbjct: 1813 DPVSASTISILELPRGSAAVAMTAMPAPSQSVVVGTSEGTVRFIDVRQR 1861


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,580
Number of Sequences: 59808
Number of extensions: 358945
Number of successful extensions: 1290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)