Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F18
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical pr...   334   3e-92
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    28   4.0  
U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human a...    28   5.2  
Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U29614-3|AAA68811.1|   91|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein ...    27   9.1  

>Z30423-1|CAA83003.1| 1681|Caenorhabditis elegans Hypothetical protein
            T20G5.1 protein.
          Length = 1681

 Score =  334 bits (820), Expect = 3e-92
 Identities = 150/185 (81%), Positives = 176/185 (95%)
 Frame = +2

Query: 2    ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
            ESYIE+EL++A A+TGRL +LEEFI+GPNHA I +IGDRCFD+ M+++AK+L+NNVSNFA
Sbjct: 1168 ESYIETELVFALAKTGRLTELEEFIAGPNHAQIGQIGDRCFDNGMFDSAKILFNNVSNFA 1227

Query: 182  RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
            +L++TLV L E+QGAVD+ARKANST+TWK+VCF+CV+ GEFRLAQMCGLHIVVHADELE+
Sbjct: 1228 KLSVTLVRLGEYQGAVDAARKANSTKTWKQVCFSCVENGEFRLAQMCGLHIVVHADELEE 1287

Query: 362  LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
            LIN+YQDRGHF+ELI+LLEAALGLERAHMGMFTELAILYSKYKP KMREHLELFWSRVNI
Sbjct: 1288 LINFYQDRGHFEELIALLEAALGLERAHMGMFTELAILYSKYKPEKMREHLELFWSRVNI 1347

Query: 542  PKVLR 556
            PKVLR
Sbjct: 1348 PKVLR 1352


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 137 YNAAKLLYNNVSNFARLAITLVHLKEFQGA 226
           + +  LL  ++SNF  + I+L H K+ QGA
Sbjct: 10  FTSTSLLICSISNFTLIYISLFHSKQIQGA 39


>Z81579-3|CAB04658.1|  248|Caenorhabditis elegans Hypothetical
           protein R13H4.6 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 21/63 (33%), Positives = 28/63 (44%)
 Frame = +2

Query: 266 KEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAH 445
           KE      DA  F L   C + +  H  E+   + YY +  H D   ++L  ALGL  A 
Sbjct: 89  KEGARLAYDAVTFNL---CSMGVSQHPREVR--VQYYAE-SHLDRKSAILTTALGLMAAF 142

Query: 446 MGM 454
            GM
Sbjct: 143 TGM 145


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
 Frame = +2

Query: 95  DIQKIGDRCFDDKMYNAAKLLYNNV---------SNFARLAITLVHLKEFQGAVDSARKA 247
           DIQKIG     DK ++  KL  N +         SNF    I    +   + A D AR  
Sbjct: 188 DIQKIGSWPAADKNWDETKLNLNEMLLNIVKLGSSNFGLFQIRPTEVPFLEVAPDMARSP 247

Query: 248 NSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQDRGHFDEL-ISLLEA- 421
             +  ++++ F  ++    +  +      V     LE+ ++ Y    + +++  S L+A 
Sbjct: 248 KVSANFQQIIFDILEKNGLQPDENVIADDVEDYITLEETLSQYAYDYNAEKVQFSKLQAQ 307

Query: 422 --ALGLERAHMGMF--TELAILYSKYKPAKM-REHLELFWSRVNIPKVLR 556
             +L LE+    M       +L +K KP  +  +H   F  ++N+ K+L+
Sbjct: 308 VPSLKLEKIIEEMMNPNRKKLLVTKVKPRMVAHKHSLFFDEKMNLEKLLK 357


>U42843-5|AAA83597.2|  375|Caenorhabditis elegans Beclin (human
           autophagy) homologprotein 1 protein.
          Length = 375

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = -3

Query: 229 DGTLEFLEVHKRNGQPCKVADIVVQQFGRVVHLVVEAPVSDLLYVRMVRSGDEL 68
           D  +EF E++   GQ   + +I++++ G   H ++   +    Y+++ R+G ++
Sbjct: 224 DAPVEFTEINAALGQIVLLLEILLERIGVQHHELMPVAMGSHSYIKLRRNGIDM 277


>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  ELIYAYARTGRLADLEEFISGPNHADIQKIGDRC 121
           E +  Y R G  +++E+ +SG NH +I K    C
Sbjct: 287 EYLTVYGRHGDGSNVEDVLSGINHLEIPKTRSIC 320


>Z74476-6|CAA98967.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 418
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


>Z74473-6|CAA98951.1| 1139|Caenorhabditis elegans Hypothetical
           protein F56H9.5 protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 418
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


>U29614-3|AAA68811.1|   91|Caenorhabditis elegans Hypothetical
           protein F18E9.6 protein.
          Length = 91

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 43  HRTAGRPRRVHLRTEPCGHTKDRRPVL 123
           +RT+G P R H+R  P G +  RRP +
Sbjct: 60  NRTSGGPNRTHMR--PVGGSYPRRPTI 84


>U20168-1|AAA66364.1| 1139|Caenorhabditis elegans Lin-25 protein
           protein.
          Length = 1139

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 260 TWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQ-----DRGHFDELISLLE 418
           TW +V  + ++    R+   C     +  + + +++NY Q     D+ H DELIS+++
Sbjct: 80  TWNQVIHSVINTKTDRIYSKC-----LQCELIREMVNYVQIKSFSDKLHADELISIMK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,977
Number of Sequences: 27780
Number of extensions: 252580
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)