Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F18
         (558 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ...   258   2e-69
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ...   256   6e-69
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    30   1.2  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    29   1.6  
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c...    28   3.7  
At1g42440.1 68414.m04894 expressed protein contains Pfam domain,...    28   3.7  
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c...    28   4.9  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    27   6.4  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    27   6.4  
At3g46850.1 68416.m05085 subtilase family protein contains simil...    27   6.4  
At1g60987.1 68414.m06866 expressed protein                             27   6.4  
At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein c...    27   6.4  
At3g53950.1 68416.m05960 glyoxal oxidase-related contains simila...    27   8.5  

>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1705

 Score =  258 bits (631), Expect = 2e-69
 Identities = 113/185 (61%), Positives = 157/185 (84%)
 Frame = +2

Query: 2    ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
            E  ++SELIYAYA+  RL ++EEFI  PN A++Q +GDR +D+ +Y AAK++Y  +SN+A
Sbjct: 1180 EPKVDSELIYAYAKIERLGEIEEFILMPNVANLQHVGDRLYDEALYEAAKIIYAFISNWA 1239

Query: 182  RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
            +LA+TLV L++FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL+I++  D+LE+
Sbjct: 1240 KLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEE 1299

Query: 362  LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
            +  YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+  K+ EH++LF +R+NI
Sbjct: 1300 VSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNI 1359

Query: 542  PKVLR 556
            PK++R
Sbjct: 1360 PKLIR 1364


>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
            Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
            sapiens]
          Length = 1703

 Score =  256 bits (628), Expect = 6e-69
 Identities = 112/185 (60%), Positives = 156/185 (84%)
 Frame = +2

Query: 2    ESYIESELIYAYARTGRLADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFA 181
            E  ++SELIYAYA+  RL ++EEFI  PN A++Q +GDR +D+ +Y AAK++Y  +SN+ 
Sbjct: 1180 EPKVDSELIYAYAKIDRLGEIEEFILMPNVANLQHVGDRLYDEALYEAAKIIYAFISNWG 1239

Query: 182  RLAITLVHLKEFQGAVDSARKANSTRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELED 361
            +LA+TLV L++FQGAVD+ARKANS +TWKEVCFACVDA EFRLAQ+CGL+I++  D+LE+
Sbjct: 1240 KLAVTLVKLQQFQGAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEE 1299

Query: 362  LINYYQDRGHFDELISLLEAALGLERAHMGMFTELAILYSKYKPAKMREHLELFWSRVNI 541
            +  YYQ+RG F+ELISL+E+ LGLERAHMG+FTEL +LY++Y+  K+ EH++LF +R+NI
Sbjct: 1300 VSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNI 1359

Query: 542  PKVLR 556
            PK++R
Sbjct: 1360 PKLIR 1364


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
            PROSITE domains, PS00674: AAA-protein family signature
            and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +2

Query: 53   LADLEEFISGPNHADIQKIGDRCFDDKMYNAAKLLYNNVSNFARLAITLVHLKEFQGAVD 232
            ++ + +FIS  N+  +Q+   +  ++   N A        NF        H  E QG++D
Sbjct: 1838 ISAVRKFISVKNNGTMQEAKVKDHEECPENEACFCKRLSGNFLASVECCSHSAEMQGSLD 1897

Query: 233  SARKANSTRTWKEVCFACVD 292
                    +TW E  F   D
Sbjct: 1898 EGNTYRRPKTWLEPVFVFKD 1917


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/79 (21%), Positives = 37/79 (46%)
 Frame = +2

Query: 251 STRTWKEVCFACVDAGEFRLAQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALG 430
           S + + E   A +  G +RL+   GL      D ++ ++N+++      + I+ LE A  
Sbjct: 471 SVKLFPETKIADIKLGRYRLSSPSGLLAEYLKDSIDGIVNFFESSTAVSQTIA-LETAAA 529

Query: 431 LERAHMGMFTELAILYSKY 487
           ++  +    TE   +Y ++
Sbjct: 530 VQDDYKHELTEEMDMYLQF 548


>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 170

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 143 RCTSCRRSTGLRSFVCPHGSV 81
           RCT+CR+  GL  F C  G++
Sbjct: 110 RCTTCRKRVGLTGFKCRCGTM 130


>At1g42440.1 68414.m04894 expressed protein contains Pfam domain,
           PF04950: Protein of unknown function (DUF663)
          Length = 793

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 552 RTFGMLTRDQNSSKCSLILAG 490
           R  GML  D++S KC+L+L+G
Sbjct: 256 RKAGMLVDDESSGKCTLLLSG 276


>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
           contains Pfam domain, PF01428: AN1-like Zinc finger
          Length = 161

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 143 RCTSCRRSTGLRSFVCPHGS 84
           RCT CR+  GL  F+C  G+
Sbjct: 101 RCTVCRKRVGLTGFMCRCGT 120


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/78 (24%), Positives = 33/78 (42%)
 Frame = +2

Query: 287 VDAGEFRLAQMCGLHIVVHADELEDLINYYQDRGHFDELISLLEAALGLERAHMGMFTEL 466
           + + EF + QM    ++ +      +IN Y  +G  +E +SLL           G FT  
Sbjct: 380 LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNG-FTYG 438

Query: 467 AILYSKYKPAKMREHLEL 520
            ++   +K  K    +EL
Sbjct: 439 TVIDGLFKAGKEEMAIEL 456


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -3

Query: 307 SELARVDASEANLLPCPSRVSFPCAVDGTLEFLEVHKRNGQPCKVADIVVQQF 149
           S+L+RV     +  P P++  FP  ++   +F+ +H+   QP     +++ Q+
Sbjct: 519 SDLSRVHVPSLHSNPVPNQPRFPAYINPYSQFVGLHQMQ-QPPLPLQVILSQY 570


>At3g46850.1 68416.m05085 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo];
          Length = 736

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +3

Query: 60  TSKSSSPDRTMRTYKRSETGASXXXXXXXXXXXXXMSATLHGWPLRLCTSRNSRVPSTAQ 239
           T +SS  DR +R YKRS  G +             M   +  +P     S+N  + +T  
Sbjct: 61  TGESSIQDRLVRNYKRSFNGFAARLTESEREILASMDEVVSVFP-----SKNLNLQTTTS 115

Query: 240 GKLTRLGHGRR 272
                L  G+R
Sbjct: 116 WNFMGLKEGKR 126


>At1g60987.1 68414.m06866 expressed protein
          Length = 97

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = -3

Query: 322 THLSQSELARVDASEANLLPCPSRVSF---PCAVDGTLEFLEV 203
           +HLSQ E +R++ +      CPS++      C VDG  + L++
Sbjct: 19  SHLSQGEESRMNINAERRPWCPSKIQMFDTNCEVDGAKQCLDL 61


>At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein
           contains Pfam domains, PF01428: AN1-like Zinc finger and
           PF01754: A20-like zinc finger
          Length = 173

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 143 RCTSCRRSTGLRSFVCPHGSV 81
           RCT+C +  GL  F C  GS+
Sbjct: 113 RCTTCNKRVGLTGFKCRCGSL 133


>At3g53950.1 68416.m05960 glyoxal oxidase-related contains
           similarity to glyoxal oxidase precursor [Phanerochaete
           chrysosporium] gi|1050302|gb|AAA87594
          Length = 545

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 151 FGRVVHLVVEAPVSDLLYVRMVRSGDELFEVG 56
           FGR++  +V  P  ++L +   ++G + FE+G
Sbjct: 327 FGRIMGDMVNLPTGEILIINGAQAGSQGFEMG 358


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,520
Number of Sequences: 28952
Number of extensions: 232456
Number of successful extensions: 828
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)