Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F17
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.043
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    31   0.057
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   1.2  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   2.1  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   2.1  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    25   2.1  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   2.8  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   3.7  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    24   4.9  
SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   6.5  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    23   8.6  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    23   8.6  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.1 bits (67), Expect = 0.043
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 250 SALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGA--AETVDKARTR 104
           SA  S   AIA P +I P   +RP+ S+F+K+      A     +D ART+
Sbjct: 194 SATLSGALAIADPNIISPIDSVRPLLSLFIKSITSAISALILSPLDIARTK 244


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 30.7 bits (66), Expect = 0.057
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 123 STKPEPERTRRKISLRSSSLNIVNFNKRNI 34
           STK  P+R +R++ L+ SS N   FN+ ++
Sbjct: 42  STKKSPKRLKRQVDLQKSSFNDKTFNESDV 71


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 103 LWFWLCRQFRLRLSRNGKSSRKLKK 177
           LW WL R   LR++  G +   L+K
Sbjct: 419 LWLWLFRMLNLRIASMGNNHTLLEK 443


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 23  NLNSIFRLLKLTIFNDELLKDIFLRVR 103
           +LNS+ + LKL  FN E  +D+F++ R
Sbjct: 32  SLNSVLQFLKLYKFNKE-WEDVFIKSR 57


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 250 SALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSG 137
           S L  P T IA PA++   + L   F  F K F F  G
Sbjct: 52  SNLRQPITTIAQPAILACSIALLRAFPPFTKKFRFYVG 89


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 159 RLSISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKR 40
           RL +   A  KL T  + ++    ISL  ++L ++NF K+
Sbjct: 128 RLQMLVTAYEKLRTLRQNQKFGEAISLMQATLQLLNFFKK 167


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 156 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKRNIELR 25
           LS+ A+   +L   P P++TRR +S     LN VN+ +     R
Sbjct: 194 LSLEAREVFQLHHPPSPKQTRRVVS--EGPLNGVNYKQNTTNNR 235


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 136 AAETVDKARTRANTKKNILEKFIVEY 59
           AAE++ K    + T KN+L  F+V+Y
Sbjct: 17  AAESISKDELYSWTLKNVLILFLVQY 42


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 139 GAAETVDKARTRANTKKNILEKFIVEY 59
           G++  + K R +    +N+L ++IVEY
Sbjct: 244 GSSRLIIKGRFQQKQIENVLRRYIVEY 270


>SPBC365.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 150 ISAQAQPKLSTKPEPERTRRKISL 79
           ++  +QP LS KP P  T ++I +
Sbjct: 1   MALNSQPPLSPKPVPSNTWKRIGI 24


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 163 RKLKKWVATSETALSRLDQR 222
           ++LKK ++ +ET L RLD++
Sbjct: 67  KQLKKSLSEAETKLKRLDEK 86


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 74  LLKDIFLRVRSGSGFVDSF 130
           + KD++L  +S +G+VD+F
Sbjct: 382 MTKDLYLLSKSPNGYVDTF 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,082,219
Number of Sequences: 5004
Number of extensions: 17101
Number of successful extensions: 61
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)