Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F17
(323 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14096.1 68417.m02176 F-box family protein contains F-box dom... 28 1.6
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 2.2
At5g59990.1 68418.m07523 expressed protein ; expression supporte... 27 3.8
At5g01120.1 68418.m00016 hypothetical protein contains Pfam prof... 26 5.0
At3g27180.1 68416.m03399 expressed protein 26 6.7
At2g35550.2 68415.m04355 expressed protein 26 6.7
At2g35550.1 68415.m04354 expressed protein 26 6.7
At3g56910.1 68416.m06330 expressed protein 25 8.8
At3g24460.1 68416.m03069 TMS membrane family protein / tumour di... 25 8.8
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 25 8.8
At2g42700.1 68415.m05287 expressed protein 25 8.8
>At4g14096.1 68417.m02176 F-box family protein contains F-box domain
Pfam:PF00646
Length = 468
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = -2
Query: 301 SQKGLHYFKLKLQLIYPSALASPKTAIAGPALIMPFLMLRPIFSIFLKTFHFGSGAAETV 122
S LH + ++ + ++PS + KT + ++ P L ++ LKT + S E
Sbjct: 115 SDLDLHVY-METEFVFPSEMFLSKTLVRLKLMLYPLLEFEDVYLPKLKTLYIDSCYFEKY 173
Query: 121 DKARTRANTKKNILEKFIVE 62
T+ + ILE +++
Sbjct: 174 GIGLTKLLSGCPILEDLVLD 193
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -3
Query: 156 LSISAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNK 43
+S++A+ PKLS+ E ER R + + I+N N+
Sbjct: 789 MSLAARFPPKLSSSREDERNVRSVVVEDPEGCILNLNE 826
>At5g59990.1 68418.m07523 expressed protein ; expression supported
by MPSS
Length = 241
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 117 KPEPERTRRKISLRSSSLNIVNFNKRNIELRFICNTT 7
K PE + KI S N+ NFNKR +++ C T
Sbjct: 157 KYSPEEKKEKIEKYRSKRNLRNFNKR---IKYECRKT 190
>At5g01120.1 68418.m00016 hypothetical protein contains Pfam profile
PF05056: Protein of unknown function (DUF674)
Length = 510
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 8 VVLHINLNSIFRLLKLTIFNDELLKDIFLRVRSGSG 115
++L +NL + LL +D L D FL+ +S G
Sbjct: 208 MILEVNLQEVATLLVCLFTSDTPLTDTFLKKKSSHG 243
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 88 FSSCSLWFWLCRQFRLRLSRNGKSSRKL 171
F SC LW W C R +L+ G S L
Sbjct: 88 FDSCRLWGWRC---RAKLAVRGSSDNAL 112
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 147 SAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKR 40
S P + KP+P+R +R +S +S + KR
Sbjct: 79 SVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKR 114
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 147 SAQAQPKLSTKPEPERTRRKISLRSSSLNIVNFNKR 40
S P + KP+P+R +R +S +S + KR
Sbjct: 124 SVNQSPSKALKPKPQRKKRSVSNKSKKTPSIPETKR 159
>At3g56910.1 68416.m06330 expressed protein
Length = 148
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 138 AQPKLSTKPEPERTRRKISLRSSSLN 61
A P LS KP ++ ++SL + SLN
Sbjct: 30 ASPVLSLKPNAVESKNRVSLSAYSLN 55
>At3g24460.1 68416.m03069 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 409
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 223 IAGPAL-IMPFLMLRPIFSIFLKTFHFGSG 137
I PAL I+PFL+ I ++ + HFG+G
Sbjct: 128 IMWPALTIIPFLLPSSIIHLYGEIAHFGAG 157
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 108 PERTRRKISLRSSSLNI 58
PE+ RK+S RSS LN+
Sbjct: 20 PEKFNRKVSSRSSELNV 36
>At2g42700.1 68415.m05287 expressed protein
Length = 788
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 156 LSISAQAQPKLSTKPEPERTRRKISLRSSSL 64
+S++ +A+P +TKPE + + +S SSL
Sbjct: 407 ISVNVRARPGYATKPELQAMIKALSQSQSSL 437
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,538,764
Number of Sequences: 28952
Number of extensions: 88179
Number of successful extensions: 299
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -