Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F16
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.1  
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182...    29   4.1  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   5.4  
05_07_0242 + 28615573-28616304                                         28   5.4  
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891...    28   5.4  
03_05_0019 + 19862171-19863049                                         28   7.2  
01_04_0013 + 15081879-15082370,15093535-15094050                       28   7.2  

>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 436 SRTPSRINHGRCYETGSLYQQQTI 365
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>07_01_0248 -
           1821340-1821996,1823619-1823761,1824239-1824453,
           1825911-1826049,1826152-1826385,1826504-1826624
          Length = 502

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 7/43 (16%)
 Frame = +1

Query: 388 NLFHNNDHDLSAKAFATRNM-------PTISHLPSTQHCWWWS 495
           N FH N HD +  A  T NM         +S LP+    WW S
Sbjct: 171 NWFHRNGHDAACLASDTTNMIIFAGIQILLSQLPNFHKIWWLS 213


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 131 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 262
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>05_07_0242 + 28615573-28616304
          Length = 243

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 437 PEICPPFPIYHQPNTVGGGLEYMFKDKIGASASAA 541
           P + PPFP +H P+  GG       ++ G  +S+A
Sbjct: 119 PYLHPPFPYHHTPSGSGGTTTESSSEERGPPSSSA 153


>03_05_0741 +
           27287414-27287479,27287887-27287946,27288949-27289112,
           27289158-27289241,27290115-27290178,27291181-27291334,
           27291605-27291675,27292138-27292242,27292734-27292826,
           27293672-27293746,27294114-27294199,27294293-27294499,
           27294585-27294684,27294765-27294835,27294960-27295041,
           27295920-27296078,27296480-27296533,27296775-27296817,
           27297630-27297712,27298569-27298631,27298720-27298794,
           27299620-27299745,27300267-27300499,27300611-27300655,
           27300953-27301019,27302095-27302166,27302276-27302520,
           27302598-27302655,27302743-27302910,27303224-27303298,
           27303412-27303669
          Length = 1101

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 461 IYHQPNTVGGGLEYMFKDKIGASASAAHTD 550
           IY+ PN+ GGG++ +F+ K+G  +S  H D
Sbjct: 205 IYY-PNSAGGGMKELFR-KVGNRSSEFHPD 232


>03_05_0019 + 19862171-19863049
          Length = 292

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 419 PRRRSRPEICPPFPIYHQPNTVGGGLEY 502
           P ++ RP I PP P+  +P+   G  +Y
Sbjct: 214 PAKQQRPTILPPPPVVKRPSPTRGKCQY 241


>01_04_0013 + 15081879-15082370,15093535-15094050
          Length = 335

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 511 LEHIFETTTNSVGLMVNGKWWAYFWSRTPSRINHGRC 401
           ++    TT N V L+  G   A F +  PS  NHGRC
Sbjct: 50  VDKTLSTTANLVKLLPTGTTLA-FQALAPSFTNHGRC 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,077,035
Number of Sequences: 37544
Number of extensions: 392797
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)