Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F16
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            32   0.45 
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.60 
SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)             29   4.2  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   28   5.6  
SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)                  28   5.6  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   9.7  

>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 433 ATRNMPTISHLPSTQHCWWWSR--IYVQGQDRCISE 534
           +TR+ PT SH+PST+H     R    +   DRCISE
Sbjct: 117 STRHAPTASHVPSTRHAPRKQRRMATLSLSDRCISE 152


>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 31/114 (27%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
 Frame = +1

Query: 127 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVY- 303
           T   V+ +  + TIN    +   +K  + GN +  L A  S    N  K G     + Y 
Sbjct: 658 TIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDKDVVISYS 714

Query: 304 DNVNRHGATLTNTH-IPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISH 462
           DN+N   A  T+   IPG   K     KVN   +     +  A  +    T SH
Sbjct: 715 DNMNNSKAANTDQFGIPGSDSKTGSDSKVNAKASGQTSNAMDASNSDTRETSSH 768


>SB_29832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -2

Query: 275  NLIWLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIVS 159
            NL  +  S  PR LS    FP +G+ TI P   S +IVS
Sbjct: 1187 NLDGVDSSVMPRELSQVLRFPFLGSFTIRPLAQSSVIVS 1225


>SB_24208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 475 GLMVNGKWWAYFWSRTPSRINH 410
           G   N +WW Y + RTP    H
Sbjct: 9   GRRTNSEWWMYLYHRTPEGATH 30


>SB_17069| Best HMM Match : Transposase_8 (HMM E-Value=7.7)
          Length = 733

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 505 HIFETTTNSVGLMVNGKWWAYFWSRTPSRINHG 407
           H   TT+ +  L+ N  W   FW+  P   +HG
Sbjct: 155 HTLNTTSVTTWLLSNTNWMRKFWTSDPKFRSHG 187


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 352 GIGDKLSVAGKVNLFHNNDHDLSAKAFAT 438
           G+ D L++ G VN+FHN   DL++++ +T
Sbjct: 612 GLSD-LTIDGHVNIFHNQGTDLNSQSGST 639


>SB_1307| Best HMM Match : Filament (HMM E-Value=0.13)
          Length = 916

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
 Frame = +1

Query: 166 INSDGTSGAMVKVPITGN-ENHKLSALGSVD----LTNQIKLGAATAGLVYDNVNRHGAT 330
           I+SD    + ++V  +GN +N  LS + S        N I    +T+ L + N   HG+T
Sbjct: 632 ISSDYHGDSSLRVHSSGNHDNTSLSGVSSGSHGNFSGNGIYRSRSTSNLSHGN---HGST 688

Query: 331 LTNTHIPGIGDKLSVAGKVNLFHNN 405
            T     GI   L+     N FH N
Sbjct: 689 TTRNMSSGIQSNLAFGRLSNGFHEN 713


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 266 WLVRSTEPRALSL*FSFPVIGTLTIAPEVPSELIV 162
           W+V ++EP  LS      +I T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,034,588
Number of Sequences: 59808
Number of extensions: 424006
Number of successful extensions: 937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)