Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F16
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43990.2 68418.m05382 SET domain-containing protein identical... 33 0.21
At5g43990.1 68418.m05383 SET domain-containing protein identical... 33 0.21
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 30 1.1
At5g02930.1 68418.m00236 F-box family protein low similarity to ... 29 2.6
At5g02910.1 68418.m00234 F-box family protein similar to ribosom... 29 2.6
At5g28623.1 68418.m03496 hypothetical protein 28 6.0
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain... 27 7.9
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 7.9
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 127 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 306
++ V +AGE +DGT+ + + +HKL+A +++ ++L ++ +G V
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276
Query: 307 NVNRHGAT-LTNTHIPGI 357
N++ AT +N H+P +
Sbjct: 277 NLSFAPATGGSNPHLPSM 294
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 127 TSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYD 306
++ V +AGE +DGT+ + + +HKL+A +++ ++L ++ +G V
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253
Query: 307 NVNRHGAT-LTNTHIPGI 357
N++ AT +N H+P +
Sbjct: 254 NLSFAPATGGSNPHLPSM 271
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 265 QIKLGAATAGLVYDNVNRHGATLTNTHIPGIGDKLSVAGKVNLFHNNDH 411
Q K+ +Y V+ G TLTN H+P G K V + N F +H
Sbjct: 1597 QTKVTVLFGNTIY--VDSPGETLTNVHVPAEGYKFPVKFRENKFAVTEH 1643
>At5g02930.1 68418.m00236 F-box family protein low similarity to
ribosomal RNA apurinic site specific lyase [Triticum
aestivum] GI:6505722; contains F-box domain Pfam:PF00646
Length = 469
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -3
Query: 553 EISVSGAR*CTDLVLEHIFE--TTTNSVGLMVNGKWWAYFWSRTP 425
++ V D VL+HIF T ++ V K W + WS TP
Sbjct: 24 DVGVDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETP 68
>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
RNA apurinic site specific lyase [Triticum aestivum]
GI:6505722; contains F-box domain Pfam:PF00646
Length = 458
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 520 DLVLEHIFET--TTNSVGLMVNGKWWAYFWSRTPS 422
D +L HI + T +++ + K W Y WS TPS
Sbjct: 18 DEILHHILSSVPTKSAIRTSLLSKRWRYVWSETPS 52
>At5g28623.1 68418.m03496 hypothetical protein
Length = 236
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 497 EYMFKDKIGASASAAHTDFFNKNDYYLGGKLNLFKTPSTSL 619
E+ K +GA S H F +Y+ + FK P T L
Sbjct: 67 EFFTKMGLGAFTSMDHATFSEPTNYFFSTMVYTFKNPKTPL 107
>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein Pfam profile PF00564: PB1
domain
Length = 720
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 419 PRRRSRPEICPPFPIYHQPNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYY 574
P RS+P+ PP + + GGG E + + + +S ++ F + Y
Sbjct: 399 PTPRSQPQNLPPQQAHQLKSNSGGGHELPSPNSVSSDSSMSNPMFHQRPSVY 450
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 27.5 bits (58), Expect = 7.9
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +2
Query: 407 TMIYPRRRSRPEICPPFPIYHQPNTVGGGLEYMFKDKIGASASAAHTDFFNKNDYYLGGK 586
T I R +S P + PP P P G G+E+ FK K G S + ND G+
Sbjct: 365 TAIEERLKSNP-LPPPPP----PPADGSGMEFAFKSKDGDSNTDVARSDAAANDVETSGE 419
Query: 587 LNLFKTPS 610
N T S
Sbjct: 420 HNRPDTSS 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,967,125
Number of Sequences: 28952
Number of extensions: 295552
Number of successful extensions: 692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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