Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F14
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0356 + 17141107-17141165,17141502-17141650,17141748-171419...    28   7.4  

>10_08_0356 +
           17141107-17141165,17141502-17141650,17141748-17141969,
           17142051-17142187,17142319-17142570,17143915-17144063,
           17144476-17144540,17144633-17144701,17145014-17145144,
           17145218-17145505,17145669-17145811,17145898-17145951,
           17146000-17146080,17149048-17149222,17149223-17149647,
           17149929-17150144,17150279-17150309
          Length = 881

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 34  FFFTPLAIVLVSFRSKPPFNGNSRCFFLIYLLNVSRYY 147
           F ++P   +LVSF   P FN   R  +  Y+L+V  Y+
Sbjct: 605 FLYSPCDCILVSFLPAPAFNSWIRSVY--YILHVFYYF 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,054,034
Number of Sequences: 37544
Number of extensions: 257111
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)