Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F14
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)            30   1.9  
SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_16268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     28   5.7  
SB_52320| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.6  

>SB_51730| Best HMM Match : Methyltransf_6 (HMM E-Value=8.8)
          Length = 409

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 145 YKLFEIMKN*SARSCHI*L-----YKK*NYHIRSQLSFRNL*SGRIF*GPSGYINRLNDY 309
           YK F +  N +  SCH+ +     Y K  Y + S +S       R+F    G++N +NDY
Sbjct: 355 YKTFSLANNRTLTSCHLEVGTGSQYPKSEYQVSSAMS-------RVFRDVVGHVNSINDY 407


>SB_17953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 145 YKLFEIMKN*SARSCHI*L-----YKK*NYHIRSQLSFRNL*SGRIF*GPSGYINRLNDY 309
           Y  F +  N +  SCH+ +     Y +  Y + S++S       R+F    GY+N +NDY
Sbjct: 566 YNTFSVANNRTLTSCHLQVGTGNQYPESEYQVSSEMS-------RVFRDVLGYVNSINDY 618


>SB_16268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +1

Query: 145 YKLFEIMKN*SARSCHI*L-----YKK*NYHIRSQLSFRNL*SGRIF*GPSGYINRLNDY 309
           Y  F +  N +  SCH+ +     Y +  Y + S++S       R+F    GY+N +NDY
Sbjct: 52  YNTFSVANNRTLTSCHLQVGTGNQYPESEYQVSSEMS-------RVFRDVLGYVNSINDY 104


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 145 YKLFEIMKN*SARSCHI*L-----YKK*NYHIRSQLSFRNL*SGRIF*GPSGYINRLNDY 309
           Y  F ++ N +  SCH+ +     Y    Y + S++S       R+F    GY N +NDY
Sbjct: 697 YNTFSVVNNRALTSCHLEVGTGNQYPGSEYQVSSEIS-------RVFRDVLGYFNSINDY 749


>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 340

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/71 (25%), Positives = 33/71 (46%)
 Frame = +2

Query: 167 KINRRDPVIFNFIKNKTTIFVLNCRLETYKAEGYSKDLPDISID*MIM*SKNIKKNQLIA 346
           K+N     I N +K+K  +FV +C+   +  EG+ +  P I +  +    K +K+  +  
Sbjct: 260 KLNFLFSFIRNHLKSKILVFVSSCKQVKFIYEGFRRLQPGIPLMALYGKQKQLKRVAIYD 319

Query: 347 FYWKNHLVYLF 379
            + K     LF
Sbjct: 320 EFCKKTQCVLF 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,588
Number of Sequences: 59808
Number of extensions: 325526
Number of successful extensions: 639
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)