Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F13
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    29   0.63 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   1.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.9  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   4.4  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    26   5.8  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   5.8  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    25   7.7  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   7.7  

>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 361 IVCKIEELRPSFQASYNAPYRCACHSSGRCDGQVVAFIHAKVRELLA-RCSQFHVQLLNC 185
           +V     LRP  Q ++  PY    ++ G    Q VA ++   + ++A R S  H +L + 
Sbjct: 315 LVTPAGRLRPHGQPNFEVPYTAYIYTRGSITKQPVACLNGFKKPVIAVRFSPIHYELNSF 374

Query: 184 PLESFIVCSF 155
              SF   SF
Sbjct: 375 SNFSFTSVSF 384


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +2

Query: 407 RYAHRGLLLDTSRH--YLSLSKI--LKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPEL 574
           +Y  + ++LD   H  Y  LS +      D    + + + H+H+    S PY  +K    
Sbjct: 56  QYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFR 115

Query: 575 SRLGAYHPTLVYTK 616
            R+   HPT    K
Sbjct: 116 GRVFMTHPTKAVCK 129


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 614 WCTLMLDDKLRVDLVRETFHCDKENSDHRRYANGVRSFYSRPWHRYSL 471
           W T +++ KLR +++RE F        H R   G R F+SR  HR S+
Sbjct: 471 WGTTLINRKLREEVLREVF-----APKHARRRLGTR-FHSRSSHRPSV 512


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 473 KNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLG 586
           K +D +   +  VL WH + +Q +  + +   ELS LG
Sbjct: 111 KLLDFLQVQEKGVLAWHFIPNQEYNCYVKNKTELSFLG 148


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 307 GRYKRLGNLVATLLSYKRFQGIA 375
           G +  LGN+VAT  SY  FQG A
Sbjct: 305 GSFLVLGNVVATKGSYNTFQGEA 327


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 568 GKLFTVIRKTLIIDDMPMEYVHFIR 494
           G ++  ++KT+IIDD  ++Y+  ++
Sbjct: 164 GTMYAFLKKTVIIDDSYLQYLSTVK 188


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 389 DIYDYPRYAHRGLLLDTSRH 448
           D YDYPRY+ R   L++ RH
Sbjct: 189 DYYDYPRYSER-KSLNSKRH 207


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 605 LMLDDKLRVDLVRETFHCDKENSD 534
           L +DD+ R D V ETFH D+E  D
Sbjct: 357 LKIDDEQR-DYVMETFHEDEELED 379


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 374 RINSTDIYDYPRYAHRGLLLDTSRHY 451
           R+NS+D++   RY  R + L+ ++++
Sbjct: 357 RMNSSDLFSKARYVRRAIQLEFNKNF 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,867
Number of Sequences: 5004
Number of extensions: 58872
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)