Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F13
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1000 - 23220878-23221821,23222164-23223001 131 4e-31
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 124 5e-29
03_02_0187 - 6248226-6249226,6249296-6250148 121 5e-28
01_06_1626 - 38734128-38734160,38734386-38734560,38734819-387348... 94 1e-19
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 67 1e-11
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 29 3.4
07_03_1243 + 25134422-25135201 28 6.0
>07_03_1000 - 23220878-23221821,23222164-23223001
Length = 593
Score = 131 bits (317), Expect = 4e-31
Identities = 67/151 (44%), Positives = 88/151 (58%), Gaps = 4/151 (2%)
Frame = +2
Query: 242 GMDESYNLX---XXXXXXXXXXXIWGVIRGLETWSQLFYLTNDFRELRINS-TDIYDYPR 409
G+DESY L WG +RGLET+SQL + R + + + + D P
Sbjct: 127 GVDESYALEILPAGAAATVTAATAWGAMRGLETFSQLAWWCGRERAVLVAAGVRVEDRPL 186
Query: 410 YAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 589
Y HRGL+LDT R Y ++ IL+ IDAMAANKMNV HWHI D QSFP P L+ G+
Sbjct: 187 YPHRGLMLDTGRTYFPVADILRTIDAMAANKMNVFHWHITDSQSFPLELPSEPALAEKGS 246
Query: 590 YHPTLVYTKRDIEIVVKHAAERGVRVLTEVD 682
Y + YT D++++V A RGVRV+ E+D
Sbjct: 247 YGDGMRYTVDDVKLIVDFAMNRGVRVVPEID 277
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 124 bits (300), Expect = 5e-29
Identities = 70/156 (44%), Positives = 92/156 (58%), Gaps = 7/156 (4%)
Frame = +2
Query: 239 FGMDESYNLXXXXXXX-----XXXXXIWGVIRGLETWSQL--FYLTNDFRELRINSTDIY 397
FG+DESYNL ++G + LET+SQL F T+ EL+ I
Sbjct: 108 FGVDESYNLSVPATGSPIYAQIEAQTVFGALHALETFSQLCNFDFTSRLIELQSAPWSIT 167
Query: 398 DYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELS 577
D PR+ +RGLL+DTSRHYL + I ID+M +K+NVLHWHIVD+QSFP +P+L
Sbjct: 168 DMPRFPYRGLLIDTSRHYLPVPVIKSVIDSMTYSKLNVLHWHIVDEQSFPIEIPSYPKLW 227
Query: 578 RLGAYHPTLVYTKRDIEIVVKHAAERGVRVLTEVDV 685
GAY + YT D +V++A RGV VL E+DV
Sbjct: 228 N-GAYSYSERYTMDDAIDIVQYAERRGVNVLAEIDV 262
>03_02_0187 - 6248226-6249226,6249296-6250148
Length = 617
Score = 121 bits (292), Expect = 5e-28
Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 7/154 (4%)
Frame = +2
Query: 245 MDESYNLXX---XXXXXXXXXXIWGVIRGLETWSQLFYL----TNDFRELRINSTDIYDY 403
+DESY L WG IRGLET+SQL + + + + + +I D
Sbjct: 130 VDESYTLSVLPDSGSADISAATPWGAIRGLETFSQLAWAGGGAASGGQPIVPSGIEISDR 189
Query: 404 PRYAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRL 583
P + HRG+LLDT+R++ + IL + AMA NK+NV HWHI D QSFP P L+
Sbjct: 190 PHFTHRGILLDTARNFYPVRDILHTLRAMAFNKLNVFHWHITDAQSFPIVLPTVPNLANS 249
Query: 584 GAYHPTLVYTKRDIEIVVKHAAERGVRVLTEVDV 685
G+Y PT+ YT+ D+ +V AA G+RV+ E+D+
Sbjct: 250 GSYSPTMRYTENDVRHIVSFAASFGIRVIPEIDM 283
>01_06_1626 -
38734128-38734160,38734386-38734560,38734819-38734878,
38734961-38735059,38735191-38735224,38735315-38735374,
38735596-38735696,38735949-38736014,38736695-38736825,
38736946-38737038,38737273-38737338,38737459-38737494,
38738308-38738382,38738475-38738792
Length = 448
Score = 93.9 bits (223), Expect = 1e-19
Identities = 68/185 (36%), Positives = 99/185 (53%), Gaps = 8/185 (4%)
Frame = +2
Query: 155 EAANDERFQGTVQELHVELTAPCEKLPYFGMDESYNLXXXXXXX-----XXXXXIWGVIR 319
+ AN F + ++V + +P ++L FG+DESYNL ++G +
Sbjct: 84 DGANPSSF--VLTGVNVVVHSPEDELK-FGVDESYNLSVPTAGYPLRVQIEAQTVFGALH 140
Query: 320 GLETWSQLF--YLTN-DFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAM 490
L+ S+L +LT+ DF + + D R L DTSRHYL ++ I K ID M
Sbjct: 141 ALQNSSRLLGEFLTHQDF----LTEDFLLDQMR-----LHADTSRHYLPVTVIKKVIDTM 191
Query: 491 AANKMNVLHWHIVDDQSFPYHSEKFPELSRLGAYHPTLVYTKRDIEIVVKHAAERGVRVL 670
A +K+NVLHWHIVD QSFP +P+L G+Y + YT D +V++A RGV V+
Sbjct: 192 AYSKLNVLHWHIVDAQSFPIEIPSYPKLWN-GSYSFSERYTTSDAVDIVRYAENRGVNVM 250
Query: 671 TEVDV 685
E+DV
Sbjct: 251 AEIDV 255
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 66.9 bits (156), Expect = 1e-11
Identities = 44/117 (37%), Positives = 62/117 (52%), Gaps = 11/117 (9%)
Frame = +2
Query: 188 VQELHVELTAPCEKLPYFGMDESYNLXXXXX---------XXXXXXXIWGVIRGLETWSQ 340
V +L V + + EKL G+DESY + I+G IRGLET+SQ
Sbjct: 101 VGKLTVVVASADEKLE-LGVDESYTIYVAAAGGVNSIVGGATIEANTIYGAIRGLETFSQ 159
Query: 341 LFYLTNDFRELRINSTDIY--DYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAANKM 505
L D + + + Y D PR+A RGLLLDTSRH+L + I + ID+M+ +K+
Sbjct: 160 LCVFNYDTKNVEVRHAPWYIEDEPRFAFRGLLLDTSRHFLPVDVIKQVIDSMSFSKL 216
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 335 SQLFYLTNDFRELRINSTDIYDYPRYAHRGLLLDTSRHYLSLSKILKNIDAMAANKMN 508
SQL Y ++DF + +N T Y Y + A +L ++ Y+ + + + ID A +N
Sbjct: 187 SQLNYYSDDFEQSFLNGTTDY-YSKKAQTWILENSCPEYMLKAALFELIDRRAEEILN 243
>07_03_1243 + 25134422-25135201
Length = 259
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 506 SFYSRPWHRYSLVSSITINSAWMC 435
SF++ PWH +L N W+C
Sbjct: 65 SFFAHPWHTLTLCRMPPENKGWVC 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,037,153
Number of Sequences: 37544
Number of extensions: 363881
Number of successful extensions: 876
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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