Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F13
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical pr...   140   8e-34
AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidas...   140   8e-34
U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U50199-3|AAA91263.1|  555|Caenorhabditis elegans Hypothetical
           protein T14F9.3 protein.
          Length = 555

 Score =  140 bits (339), Expect = 8e-34
 Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
 Frame = +2

Query: 233 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 409
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 410 YAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 589
           +  RG+++D+SRH+LS++ I + ++ M+ NK+NVLHWH+VD +SFPY S KFPEL  +GA
Sbjct: 170 FPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGVGA 229

Query: 590 YHPTLVYTKRDIEIVVKHAAERGVRVLTEVDV 685
           Y P  VY++ DI  V+  A  RG+RV+ E D+
Sbjct: 230 YSPRHVYSREDIADVIAFARLRGIRVIPEFDL 261


>AM748820-1|CAO72174.1|  555|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 555

 Score =  140 bits (339), Expect = 8e-34
 Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
 Frame = +2

Query: 233 PYFGMDESYNLXXXXXXXXXXX-XIWGVIRGLETWSQLFYLTNDFRELRINSTDIYDYPR 409
           P  G  E Y L             +WG +R +E+ S L +  +  +E +I + +I+D PR
Sbjct: 110 PVHGASEEYLLRVSLTEAVINAQTVWGALRAMESLSHLVFYDHKSQEYQIRTVEIFDKPR 169

Query: 410 YAHRGLLLDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA 589
           +  RG+++D+SRH+LS++ I + ++ M+ NK+NVLHWH+VD +SFPY S KFPEL  +GA
Sbjct: 170 FPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSVKFPELHGVGA 229

Query: 590 YHPTLVYTKRDIEIVVKHAAERGVRVLTEVDV 685
           Y P  VY++ DI  V+  A  RG+RV+ E D+
Sbjct: 230 YSPRHVYSREDIADVIAFARLRGIRVIPEFDL 261


>U28730-2|AAA68262.1| 1009|Caenorhabditis elegans Hypothetical
           protein K10B2.5 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 431 LDTSRHYLSLSKILKNIDAMAANKMNVLHWHIVDDQSFPYHSEKFPELSRLGA--YHPTL 604
           LD+ R Y +L +  +N + M  N+  V+  + +DD     H E       LG   Y P +
Sbjct: 94  LDSPR-YANLGRYRRNSEPMQDNEKEVVTTNFIDDSMIEDHEEYEEHDIELGTDFYDPHM 152

Query: 605 VYTKRDIE 628
           +   R  E
Sbjct: 153 IRHHRSSE 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,501,137
Number of Sequences: 27780
Number of extensions: 318158
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)