Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F12
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.7  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    26   3.7  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   5.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   6.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   6.5  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/81 (23%), Positives = 38/81 (46%)
 Frame = +1

Query: 157 VKINFRNLY*LNSIN*FYLNGHFCKLLISRVNYDQI*CDNIKCVFIFNSFDLRVF*MRNL 336
           + INF  LY + +I     + H C L++  + Y Q   + +   F+ + F +       L
Sbjct: 2   IYINFYELYNIKNIRPLIPSFHVCLLIMFLILYSQ---EILSFFFMCSKFSMNSLKFCVL 58

Query: 337 FTLRIFFSTYPIKFQGLIKKI 399
           F+ +  +S   +  + LI+K+
Sbjct: 59  FSFKTVYSLLKL-IKTLIRKL 78


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 475 YTKTNFTNICLFVMGNLRNGWTDFD 549
           Y +T+ T++C+F    ++  W+  D
Sbjct: 179 YKQTDLTSLCMFNQNKIQTDWSSID 203


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 508 TDKYL*NWFWYRYTFRKENFDITNRHFNF 422
           T KY   +FW +Y F  E  ++TN+   F
Sbjct: 150 TSKYNYRFFWNKYAFH-ELIELTNKDLGF 177


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 597 YPMLPEVTSAIYQTSPVKIGPAVPEITHYKQTNI 496
           YP      S +  T  VK   AVP + HY+ T +
Sbjct: 896 YPKQKSELSTVQNTVLVKADTAVPGVYHYEFTKL 929


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 585 PEVTSAIYQTSPVKIGPAVPEITHYKQTNICKIGFGIGI 469
           P + +++  TSP  +   +P++T   +  +  +GFG+G+
Sbjct: 207 PNLYASLLDTSPTTVVARIPDLTVIYRWYLW-VGFGVGL 244


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 607 TSKVPYVTRSNFSYLPNKSRQNRSS 533
           T   PY    N+S++ NKS +++S+
Sbjct: 40  TRSYPYSVSRNYSFILNKSNRSKST 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,402
Number of Sequences: 5004
Number of extensions: 50103
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)