Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F12
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954...    31   0.54 
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    29   3.8  

>05_03_0460 -
           14294931-14295110,14295200-14295234,14295358-14295457,
           14295548-14295669,14296272-14296367,14296489-14298949
          Length = 997

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = -3

Query: 399 DFFYQSLKFYGICRKKDPE 343
           +F Y SL FYGICR+KDP+
Sbjct: 510 EFTYNSL-FYGICRRKDPK 527


>07_03_0539 -
           19237573-19239169,19239258-19239410,19239505-19239566,
           19239855-19240103,19240248-19240337,19240453-19240632,
           19240713-19240942,19241558-19241735,19242327-19242432,
           19242786-19242883,19243683-19243813,19243908-19244087,
           19244179-19244443,19244557-19244627,19244707-19244922,
           19245147-19245294
          Length = 1317

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 580 SNFSYLPNKSRQNRSSRSGDYPLQTDKYL*NWFWYRYTFRKENFDITNRH 431
           ++  Y+  +SR   SSRS   P ++D     W W     R+   D +N H
Sbjct: 212 TSVDYMNKRSRHEHSSRSSRTPARSDWDSGRWEWEDTPRREYRDDRSNSH 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,031
Number of Sequences: 37544
Number of extensions: 238715
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)