Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F12
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    30   1.0  
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ...    30   1.0  
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ...    29   2.4  
At5g59920.1 68418.m07514 DC1 domain-containing protein contains ...    27   7.4  

>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 568 YLPNKSRQNR-SSRSGDYPLQTDKYL*NWFWYRYTFRKENFDITNR 434
           +LPNK R ++      +Y L T  Y   +FW  +     NFDIT++
Sbjct: 274 FLPNKGRMSKWIINKINYLLSTVFYPIFFFWVGFIIHMRNFDITDK 319


>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 437

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -3

Query: 606 HQKYPMLPEVTSAIYQTSPVKIGPAVPEITHYKQTNICKIG 484
           H     +P  T  +  +  + + P V + TH+ Q  ICK G
Sbjct: 306 HHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFG 346


>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = -3

Query: 597 YPMLPEVTSAIYQTSPVKIGPAVPEITHYKQTNICKIGFGIGIH 466
           YP L   T  I +       P  PE  +Y +T  CK G     H
Sbjct: 270 YPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFH 313


>At5g59920.1 68418.m07514 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = -3

Query: 606 HQKYPMLPEVTSAIYQTSPVKIGPAVPEITHYKQTNICKIGFGIGIH 466
           H+K   LP     ++ T P  +     EITH +   I   GF    H
Sbjct: 417 HEKCANLPMKKRLVFGTRPYTLMKETTEITHCELCGILSDGFAYSSH 463


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,885,697
Number of Sequences: 28952
Number of extensions: 229444
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)