Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F11
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    69   3e-13
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   1.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   3.1  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   4.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   5.5  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    24   9.6  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    24   9.6  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    24   9.6  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 68.9 bits (161), Expect = 3e-13
 Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
 Frame = -2

Query: 297 KKAKMGARTEDKEPTWVLQG--KKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTP 124
           KK K   +  D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI++  
Sbjct: 16  KKPKT-EKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNI 74

Query: 123 EQWRKLLSLSDEINETI 73
            +W+KL  L  E+++++
Sbjct: 75  NEWKKLKQLIHEVDDSL 91


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 314 EIHHLKKRQKWEQELKIKNQLGYYKVKSWSKLESLKVK 201
           E HH KK  +W +E     Q G  K  +WS +   K K
Sbjct: 278 ECHHFKKTNEWLEE-----QYGPEKCINWSAVSEQKAK 310


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 115  PLFWCHTDPFLS 150
            P F+CHTDP++S
Sbjct: 1095 PAFFCHTDPWVS 1106


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 198 YVDIREFYEKNGELLPGKKGISMTPEQWRKLLSLSDEINETISTLC*FLFVFNKVL 31
           ++D + FY  + ++LP  K I++  +   K +            L  F +VF K L
Sbjct: 133 FIDNQNFYRVSPQVLPKNKAIALYEKDGFKSMKKEQGFFSVNGPLKSFYWVFGKAL 188


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -3

Query: 332  MMALSTEIHHLKKRQKWEQELKIKNQLGYYKVKSWSKLESLKV 204
            ++A    IH+ K +QK  +E++ KN+L   +  ++ K + LKV
Sbjct: 2984 LLANEFYIHNAKIKQKELEEIEEKNRLYRQREFNFDKNDYLKV 3026


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
 Frame = -2

Query: 267 DKEPTWV----LQGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWRKLLS 100
           +KE T V    L   K  ++ E K ++  + +   EKN E++   + + M       L  
Sbjct: 127 EKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSEKNHEVMVSNQALQMKDTNLTNLEK 186

Query: 99  LSDEINETISTLC 61
           L  +  E + T C
Sbjct: 187 LFADSREQLETKC 199


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 240 GKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWRKLL 103
           G+ L ++ E  G   +D+R+  E+  ELL           +W+ L+
Sbjct: 655 GEMLKRIPEIPGANALDLRKINEEFSELLESLIRFEDEIREWKSLM 700


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -2

Query: 159 LLPGKKGISMTPEQWRK--LLSLSDEINETISTL 64
           LLP   G+SM PE+ +K  L  + ++I+  I+ L
Sbjct: 60  LLPSMAGVSMDPEREKKSELRLMKNQISAIINIL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,985
Number of Sequences: 5004
Number of extensions: 25763
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)