Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F11
         (457 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000...    60   8e-10
01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058     52   3e-07
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    29   1.3  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     28   4.1  
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    27   5.4  
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948...    27   5.4  
12_02_0226 + 15887835-15891188                                         27   7.2  

>02_04_0205 +
           20897376-20897597,20898623-20898774,20899874-20900084,
           20900734-20900872,20901310-20901341,20901471-20901557,
           20901720-20901932,20903687-20903869,20903979-20904084,
           20905042-20905064,20905511-20905570
          Length = 475

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 28/52 (53%), Positives = 36/52 (69%)
 Frame = -2

Query: 228 VKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWRKLLSLSDEINETI 73
           V VR + GKV VDIREFYEK+G+ LPG+KGI +  +QW+ L      I+E I
Sbjct: 420 VAVRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAI 471


>01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058
          Length = 184

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 26/61 (42%), Positives = 36/61 (59%)
 Frame = -2

Query: 246 LQGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWRKLLSLSDEINETIST 67
           L  ++ V ++EFKGK  + IRE+Y K+G+ LP  KGIS+T EQW         I + I  
Sbjct: 120 LSARRRVTLQEFKGKTLLSIREYYFKDGKELPA-KGISLTVEQWEAFRDSVPAIEDAIKK 178

Query: 66  L 64
           L
Sbjct: 179 L 179


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 375 KHKSKKAEXXXXXXXDGPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVK 223
           KHK ++ +              TP +KK K    +ED EP    +GKK  K
Sbjct: 508 KHKLEEPQDQEMAVNGNLEQDETPKKKKKKKPEASEDVEPRTATEGKKRKK 558


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 273 TEDKEPTWVLQGKKLVKVREFKG 205
           T+ + PTW L   KL +V EF+G
Sbjct: 117 TDHRGPTWRLSITKLARVNEFRG 139


>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 228 VKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQWRKLLSLSDEI 85
           + ++E+K   Y  I  + EK  + + GK   +  P  WR+   + DE+
Sbjct: 4   INIQEYKTVRYHFILLYLEKQKKNIRGKTWAAANPNPWRRRPIVVDEV 51


>03_02_1010 -
           13194002-13194339,13194421-13194573,13194661-13194809,
           13194932-13195184,13195282-13195469,13195684-13195841,
           13196093-13196307,13196410-13196614
          Length = 552

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 318 DRNTPPEKKAKMGARTEDKEPTWVLQGKKLVK 223
           +  TP +KK K    +ED EP    +GKK  K
Sbjct: 513 ENGTPKKKKKKNREVSEDAEPKTATEGKKKKK 544


>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 164 ENYYLERKGSV*HQNSGGNCCL*VMKLMKQSVPYVSF 54
           +N+YLE   ++    +  NCC  + +L ++++  V +
Sbjct: 602 DNHYLEEASNIERMRASFNCCSPIEELQRRTLDQVDY 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,952,370
Number of Sequences: 37544
Number of extensions: 139129
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)