Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F11
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)                   58   3e-09
SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)                29   1.4  
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   1.8  
SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_14690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.2  
SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)                   27   9.7  

>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
          Length = 501

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
 Frame = -2

Query: 303 PEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVYVDIREFYE-KN-GELLPGKK 142
           PE  +  G + +D    + L  K+ V VR+F+GKVYVDIREFYE KN G++ PGKK
Sbjct: 445 PEASSSSGTKQDDGSYVFPLANKRQVTVRDFRGKVYVDIREFYEDKNSGDMKPGKK 500


>SB_57257| Best HMM Match : NUC153 (HMM E-Value=1.2e-15)
          Length = 392

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -2

Query: 375 KHKSKKAEXXXXXXXDGPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVY 196
           K K +K             D    PE K      + D E TW  + +K +K ++ + ++ 
Sbjct: 220 KQKRRKEAEKAQEKMFSQFDEVEEPEGKPSDDESSSDDEHTWREEQRKQLKTKKKEKQMV 279

Query: 195 VDIREFYE-KNGELLPGKK 142
            +  +FYE K GE   G +
Sbjct: 280 PNKLKFYELKGGEEYRGAR 298


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 306 PPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVYVD-IREFYEKNGEL 157
           P   +A+ G  + +     V+Q KKL+ V++      VD +RE++EK GEL
Sbjct: 213 PVTVRARSGKESNEDLMAKVIQSKKLM-VQDLDFDTTVDELREYFEKCGEL 262


>SB_30759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -3

Query: 314 EIHHLKKRQKWEQELKIKNQLGYYKVKSWSKLESLKVK 201
           +IHHL++++K E E+ +K  LG   +    + E+L +K
Sbjct: 123 DIHHLRQKEKNEGEVVLKKALGKELILQIPEGEALAMK 160


>SB_14690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 260

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 312 NTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGI 136
           N+    KAK     +D E    L  K++ +    KGK  + ++  Y+K GE    KKG+
Sbjct: 112 NSNQALKAKEKMELDDAEKQAKLLQKQIDRELARKGKEGIIVKVIYKKLGEKYYKKKGV 170


>SB_38269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 732

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 165 GELLPGKKGISMTPEQWRKLLSLSDEINETI 73
           GEL    + + MTPE   K++  ++EI E I
Sbjct: 182 GELGKMAEAVDMTPENINKVVQTAEEIGEVI 212


>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
          Length = 951

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 268 FSSCSHFCLFFRWCISVDR 324
           F+   HF L FR C+SVDR
Sbjct: 64  FTVDHHFVLHFRCCLSVDR 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,106
Number of Sequences: 59808
Number of extensions: 168501
Number of successful extensions: 588
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)