Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_F11
(457 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09250.1 68418.m01067 transcriptional coactivator p15 (PC4) f... 69 2e-12
At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4) f... 58 4e-09
At5g09240.1 68418.m01061 transcriptional coactivator p15 (PC4) f... 54 6e-08
At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4) f... 42 2e-04
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 36 0.013
At5g09240.3 68418.m01063 transcriptional coactivator p15 (PC4) f... 35 0.023
At3g13480.1 68416.m01696 expressed protein ; expression supporte... 30 0.85
At4g20160.1 68417.m02949 expressed protein ; expression supporte... 29 1.1
At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast... 28 2.6
At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast... 28 2.6
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g... 28 3.4
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi... 27 4.5
>At5g09250.1 68418.m01067 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 107
Score = 68.5 bits (160), Expect = 2e-12
Identities = 32/87 (36%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Frame = -2
Query: 318 DRNTPPEKKAKMGARTEDKEPTWV--LQGKKLVKVREFKGKVYVDIREFYEKNGELLPGK 145
+ + P +K AK ++ + V + + V VR + GK+++DIREFY K+G+ LPGK
Sbjct: 20 ETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGK 79
Query: 144 KGISMTPEQWRKLLSLSDEINETISTL 64
KGIS++ +QW L + +++I + +S L
Sbjct: 80 KGISLSVDQWNTLRNHAEDIEKALSDL 106
>At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4)
family protein (KELP) similar to SP|P53999 Activated RNA
polymerase II transcriptional coactivator p15 (PC4)
(p14) {Homo sapiens}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4); supporting cDNA
gi|2997685|gb|AF053303.1|AF053303
Length = 165
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = -2
Query: 246 LQGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISMTPEQW 115
L K+ V ++EFKGK V IRE+Y+K+G+ LP KGIS+T EQW
Sbjct: 101 LSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQW 144
>At5g09240.1 68418.m01061 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 110
Score = 53.6 bits (123), Expect = 6e-08
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Frame = -2
Query: 381 MPKHKSKKAEXXXXXXXDGPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGK 202
M ++ +K E + + PP+K AK ED L + V VR G+
Sbjct: 1 MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIF-ICNLDKNRRVFVRNCNGR 59
Query: 201 VYVDIREFYEKNGELLP--GKKGISMTPEQWRKLLSLSDEINETISTL 64
+++ IR+F+ K+G LP K+GIS++ EQW L + ++I++ +S L
Sbjct: 60 IWIAIRQFFVKDGITLPCNSKQGISLSLEQWNDLRNHEEDIDKALSEL 107
>At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 138
Score = 41.9 bits (94), Expect = 2e-04
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Frame = -2
Query: 381 MPKHKSKKAEXXXXXXXDGPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGK 202
M ++ +K E + + PP+K AK ED L + V VR G+
Sbjct: 1 MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIF-ICNLDKNRRVFVRNCNGR 59
Query: 201 VYVDIREFYEKNGELLP--GKKGISMTPEQ 118
+++ IR+F+ K+G LP K+GIS++ EQ
Sbjct: 60 IWIAIRQFFVKDGITLPCNSKQGISLSLEQ 89
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 35.9 bits (79), Expect = 0.013
Identities = 19/83 (22%), Positives = 37/83 (44%)
Frame = -2
Query: 327 GPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVYVDIREFYEKNGELLPG 148
GP+ +T P +++ + D P WV + + L +++ G + FYE EL
Sbjct: 456 GPILHDTTPSSDSRLLIKLRDSLPAWVTEEQMLDLIKKHAGNPVDIVSNFYEYEAELY-- 513
Query: 147 KKGISMTPEQWRKLLSLSDEINE 79
K+ TP + + D++ +
Sbjct: 514 KQASLPTPSLNNQAVLFDDDVTD 536
>At5g09240.3 68418.m01063 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 120
Score = 35.1 bits (77), Expect = 0.023
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = -2
Query: 381 MPKHKSKKAEXXXXXXXDGPVDRNTPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGK 202
M ++ +K E + + PP+K AK ED L + V VR G+
Sbjct: 1 MSENGKRKDEDVRASDDRDESETHAPPKKVAKPADEIEDIF-ICNLDKNRRVFVRNCNGR 59
Query: 201 VYVDIREFYEKNGELLP 151
+++ IR+F+ K+G LP
Sbjct: 60 IWIAIRQFFVKDGITLP 76
>At3g13480.1 68416.m01696 expressed protein ; expression supported
by MPSS
Length = 205
Score = 29.9 bits (64), Expect = 0.85
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 282 GARTEDKEPTWV-LQGKKLVKVREFKGK 202
G R E K+ WV L GK+L ++REF+ +
Sbjct: 115 GGRKEKKKVQWVDLMGKELAEIREFESR 142
>At4g20160.1 68417.m02949 expressed protein ; expression supported by
MPSS
Length = 1188
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = -2
Query: 309 TPPEKKAKMGARTEDKEPTWVLQGKKLVKVREFKGKVYVDIREFYEKNGELLPGKKGISM 130
T EK G+R +DKE + G+K+ +R + K +I K+ E+ G++ S
Sbjct: 796 TQEEKSVSHGSREKDKERNSLQYGEKMCFLRNSEAKSTKEIER--NKSQEVSQGEESASH 853
Query: 129 TPEQWRKLLSLSDEINET 76
+ K + S + +ET
Sbjct: 854 GSRESAKEKNSSQQDDET 871
>At4g31990.2 68417.m04554 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 216 EFKGKVYVDIREFYEKNGELLPG----KKGISMTPEQWRKLLSLSDEIN 82
+F+G + DI+E E + LL G GI TPEQW K+ + E N
Sbjct: 209 DFEGMI-ADIKEAPEGSFILLHGCAHNPTGIDPTPEQWVKIADVIQEKN 256
>At4g31990.1 68417.m04553 aspartate aminotransferase, chloroplast /
transaminase A (ASP5) (AAT1) nearly identical to
SP|P46248 Aspartate aminotransferase, chloroplast
precursor (EC 2.6.1.1) (Transaminase A) {Arabidopsis
thaliana}
Length = 453
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -2
Query: 216 EFKGKVYVDIREFYEKNGELLPG----KKGISMTPEQWRKLLSLSDEIN 82
+F+G + DI+E E + LL G GI TPEQW K+ + E N
Sbjct: 209 DFEGMI-ADIKEAPEGSFILLHGCAHNPTGIDPTPEQWVKIADVIQEKN 256
>At1g69830.1 68414.m08034 alpha-amylase, putative /
1,4-alpha-D-glucan glucanohydrolase, putative similar to
SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
(1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
alpha-amylase [Malus x domestica] GI:7532799; contains
Pfam profile PF00128: Alpha amylase, catalytic domain
Length = 887
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 225 KVREFKGKVYVDIREFYEKNGELLPG 148
++ + +GK+YV ++E EKN EL G
Sbjct: 92 RIEKAEGKIYVRLKEVKEKNWELSVG 117
>At1g01440.1 68414.m00059 extra-large G-protein-related weak
similarity to extra-large G-protein (AtXLG1)
(GI:3201682) [Arabidopsis thaliana]
Length = 664
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 257 QLGYYKVKSWSKLESLK 207
QLGYYK +S++K +SLK
Sbjct: 440 QLGYYKQESYTKQDSLK 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,866
Number of Sequences: 28952
Number of extensions: 127940
Number of successful extensions: 427
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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