Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F10
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    31   0.10 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    28   0.55 
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   6.8  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   6.8  
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c...    25   6.8  
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar...    25   6.8  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   6.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   6.8  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    24   9.0  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   9.0  

>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 30.7 bits (66), Expect = 0.10
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 290 ATCGSLKDYLWLSINVP 240
           A CGS+KD  W SIN+P
Sbjct: 731 ADCGSVKDVTWCSINIP 747


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 412  SXSVQPFRRLHGTNRQTKN-VNIVIFCIAIL 323
            S  V  F+R+HGTN  +K+  + V+ CI  L
Sbjct: 990  SKLVNYFKRIHGTNEHSKDTADFVLHCIQFL 1020


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 266 YLWLSINVPEFPFYFCVNNIFKKKTIRTSLTTNM 165
           Y+      P F FY CV +IF       ++ T++
Sbjct: 63  YIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHL 96


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 35  AALHTLRNTGSRHLLCS-FAQFSTKRFI 115
           AA   L N   RHL+C+ + +F + RFI
Sbjct: 524 AAARFLANPADRHLICNDWERFVSTRFI 551


>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 266 YLWLSINVPEFPFYFCVNNIFK 201
           YLWL +  P  PF    +NI K
Sbjct: 503 YLWLFLYCPFTPFQILFSNILK 524


>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 413

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 72  WRDPVFRKVCNAAHWCTVEKI 10
           W++PV  K+    H C  EKI
Sbjct: 302 WKNPVTGKLALQTHGCCAEKI 322


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 198 FFKYIINTKIKRELWYIY 251
           FFK +IN    R+ W+I+
Sbjct: 205 FFKILINANFTRKSWFIH 222


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -1

Query: 269 DYLWLSINVPEFPFYFCVNNIFKKKTIRTSLTTNMKD 159
           D LW+ +  P  PF    NN+  +    T   T + D
Sbjct: 489 DPLWIFLYCPFTPFLIIFNNLVHETDTETDSETLLND 525


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 286 VAHEPQVAHPWYIR 327
           VA +P  AH WYIR
Sbjct: 880 VAADPSSAHNWYIR 893


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 TWTEINFVTTIQLVFHICCQGR-TDRFFFKYIINTKI 227
           TW+ +  + T+++V +IC     T    F YI  +KI
Sbjct: 83  TWSFMKLLKTLRIVIYICTSDHWTHSLRFYYIELSKI 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,954,589
Number of Sequences: 5004
Number of extensions: 40397
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)