Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F10
         (440 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28239| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)           27   5.2  
SB_38733| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)           27   5.2  
SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)                27   6.9  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  
SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   9.1  

>SB_28239| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
          Length = 197

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 307 AHPWYIR*RCKK*QCLHFLSVCLFRVISGTV 399
           A P++   + KK + LHFLS+ LF+V   T+
Sbjct: 102 ARPFFFISKDKKEEVLHFLSIRLFKVFCVTL 132


>SB_38733| Best HMM Match : Integrin_alpha (HMM E-Value=0.47)
          Length = 197

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 307 AHPWYIR*RCKK*QCLHFLSVCLFRVISGTV 399
           A P++   + KK + LHFLS+ LF+V   T+
Sbjct: 102 ARPFFFISKDKKEEVLHFLSIRLFKVFCVTL 132


>SB_26202| Best HMM Match : Pkinase (HMM E-Value=0.0017)
          Length = 401

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 19 HGTPVCRVTHFTKH 60
          HGTPVC V H  +H
Sbjct: 15 HGTPVCTVVHAIRH 28


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 434  PVNTKCPVXIGST--VPEITRNKQTDKKCKHCH 342
            P  TKC V +      PE T +   DKKC+  H
Sbjct: 1528 PEFTKCRVTVDELFLAPEYTNSFSIDKKCESLH 1560


>SB_39834| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 293

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 276 RAACGSRAAGCTPLVYKIAMQKMTMFTFFVCLFVPCNLRNG*TDXDGT 419
           R ACGSR   C P+  K  M +    +  V    PC LR+     +GT
Sbjct: 159 RGACGSRPDKCAPICNK--MYQPVCGSDNVTYSNPCMLRSATCKSNGT 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,666,648
Number of Sequences: 59808
Number of extensions: 312039
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)