Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F10
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam ...    28   3.5  
U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam ...    28   3.5  

>U23527-2|AAP40525.1|  300|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform b protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 342 MTMFTFFVCLFVPCNLRNG 398
           + +   FVC FV CNLR+G
Sbjct: 30  LALIILFVCFFVFCNLRSG 48


>U23527-1|AAC46575.2| 1147|Caenorhabditis elegans Neuronal igcam
           protein 1, isoform a protein.
          Length = 1147

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 342 MTMFTFFVCLFVPCNLRNG 398
           + +   FVC FV CNLR+G
Sbjct: 877 LALIILFVCFFVFCNLRSG 895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,957,667
Number of Sequences: 27780
Number of extensions: 231676
Number of successful extensions: 572
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)