Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F09
         (160 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    23   7.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     23   7.2  
SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces pombe...    23   7.2  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    22   9.5  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 90  LFYNKDPKKIMDLGGGRGLVVA 25
           ++Y+ DP++I  LG   G  VA
Sbjct: 252 IYYDADPERIFFLGEDTGASVA 273


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 53  KSIIFFGSLL*NNYIFCY 106
           +SI+FFG L    Y+ C+
Sbjct: 449 RSIVFFGYLSWIGYVICF 466


>SPCC4G3.04c |coq5||C-methytransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 305

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 72  PKKIMDLGGGRGLVVATACHQAAN 1
           P KI+D+ GG G +     + A N
Sbjct: 107 PMKILDVAGGTGDIAFRILNHATN 130


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 75  DPKKIMDLGGGRGLVV 28
           +PKK++ +GGG G V+
Sbjct: 88  NPKKVLVIGGGDGGVL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,004
Number of Sequences: 5004
Number of extensions: 2962
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 2,362,478
effective HSP length: 33
effective length of database: 2,197,346
effective search space used: 41749574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)