Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F09
         (160 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer ...    25   7.2  
U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer ...    25   7.2  
AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical...    25   7.2  
AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine sy...    25   7.2  
AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform...    25   7.2  
AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF016686-8|AAB66236.1|  388|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 90  LFYNKDPKKIMDLGGGRGL 34
           +F+  DP KI+++GG  GL
Sbjct: 101 VFWTNDPDKILEVGGSSGL 119


>U39648-6|AAM15602.1|  557|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform b protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  HYFLRIFIIK*LYFLL 105
           HYF+R+FI+  +Y ++
Sbjct: 68  HYFMRVFIVHIIYIII 83


>U39648-5|AAK39293.1|  572|Caenorhabditis elegans Abnormal dauer
           formation protein9, isoform a protein.
          Length = 572

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  HYFLRIFIIK*LYFLL 105
           HYF+R+FI+  +Y ++
Sbjct: 83  HYFMRVFIVHIIYIII 98


>AL110485-13|CAB60361.2|  314|Caenorhabditis elegans Hypothetical
           protein Y46G5A.19 protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 90  LFYNKDPKKIMDLGGGRG 37
           +F + DPK+++ +GGG G
Sbjct: 103 MFAHPDPKRVLIIGGGDG 120


>AJ306734-1|CAC37332.1|  314|Caenorhabditis elegans spermidine
           synthase protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 90  LFYNKDPKKIMDLGGGRG 37
           +F + DPK+++ +GGG G
Sbjct: 103 MFAHPDPKRVLIIGGGDG 120


>AF407572-1|AAL65132.1|  557|Caenorhabditis elegans DAF-9 isoform A
           protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 58  HYFLRIFIIK*LYFLL 105
           HYF+R+FI+  +Y ++
Sbjct: 68  HYFMRVFIVHIIYIII 83


>AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical
          protein C18H7.9 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 90 LFYNKDPKKIMDLGGGRGL 34
          L YN   KK++D+G G GL
Sbjct: 32 LKYNLKDKKVLDIGCGNGL 50


>AF016686-8|AAB66236.1|  388|Caenorhabditis elegans Hypothetical
           protein R07C3.6 protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 23  VATTKPRPPPKSIIFFGSLL*NNYIFCYTNE 115
           V  T P PP   +I F  +  +NY  C  NE
Sbjct: 150 VPNTPPEPPLVQVIEFAVMETDNYGDCLENE 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,685
Number of Sequences: 27780
Number of extensions: 19350
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 12,740,198
effective HSP length: 33
effective length of database: 11,823,458
effective search space used: 224645702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)