Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F08
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   2.0  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   8.3  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 124 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 303
           +++P       V+ +    T+N    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 304 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 408
              ++Y DN+N   A  T +  IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 340 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 510
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 485  RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 664
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 665  IRLS 676
             R +
Sbjct: 1132 TRFA 1135


>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 65  SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 244
           SA+TA   S+   + TL    +S ++GPTP  + ++   L+ + +   L      + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172

Query: 245 TG-SVPLAP 268
           +G S PL P
Sbjct: 173 SGLSTPLTP 181


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 373 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 501
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 83  TCSLKSLVTTLNNMRISRSSGPTPGC 160
           T + K+++TTL  MRI  ++GP   C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +1

Query: 205 GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 384
           G  V   +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G  
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454

Query: 385 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 468
            T     K+N + ++  DF A A  TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,785,126
Number of Sequences: 59808
Number of extensions: 525969
Number of successful extensions: 1342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)