Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F07
         (282 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                29   0.58 
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.3  
SB_47306| Best HMM Match : I-set (HMM E-Value=0)                       27   3.1  
SB_58540| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   26   5.4  
SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_29573| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_19559| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.4  

>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 275 SVINHASSTGNSVAMSDGLEFCSKRYHIID 186
           ++I++ S TGN + +  GL +C K Y++ D
Sbjct: 94  NMISNLSHTGNPIQLPYGLAWCGKYYNMCD 123


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 254 STGNSVAMSDGLEFCSKRYHIIDFFYVAAFLMCQFLW 144
           STGN  A++ G  F  + Y+ +  FY+ A L     W
Sbjct: 41  STGNFSALTVGFRFRREVYYYLFRFYIPASLTVVMSW 77


>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 129 ALPKKPKELAHKEGCYIKEINDV-VPFGTELK 221
           AL  KPK+L       IKE+ D  VP G E K
Sbjct: 536 ALMSKPKDLEKTGAPVIKELKDTSVPIGQEAK 567


>SB_58540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 151 NWHIRKAAT*KKSMMWYRLEQNSSPSDIATELPVEEA*LITLLV 282
           NW ++   T KK   W+ +E+N   +      P  E+ ++ L V
Sbjct: 3   NWALKPKCTQKKRTKWHIIEKNFEKNVQTIRNPTTESMILRLSV 46


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 179  KRNQ*CGTVWNRTQAHRTLLQNY 247
            KR   CG+ W RT AH +  + Y
Sbjct: 1398 KRPVGCGSEWKRTHAHLSCQEEY 1420


>SB_21830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 113 SVNGTNNHGYY*NFRHHFYLLINMII 36
           SV+  N++ Y+ +  HH  ++IN+II
Sbjct: 189 SVSFQNSNRYHHHHHHHIIIIINIII 214


>SB_29573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 125 YPYRSVNGTNNHGYY 81
           YP +SV+G NN  YY
Sbjct: 58  YPLQSVSGNNNERYY 72


>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 536

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 265 IMLPPQVIL*QCPMGLSSVPNGTTSL 188
           + LP   +L   P GLSS+P G +SL
Sbjct: 242 VSLPYPGVLSSLPEGLSSLPEGLSSL 267


>SB_25417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 108 NAAVWIGALPKKPKELAHK-EGCYIKEINDVVPFGTEL 218
           N A ++  L + P E+ HK EGC+ ++ +D   F TEL
Sbjct: 324 NHANFVYRLQEAPCEIKHKPEGCFAEKSDDRA-FKTEL 360


>SB_19559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 216 LKPIGHCYRITCG 254
           L PIGH Y +TCG
Sbjct: 248 LIPIGHRYHLTCG 260


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 281  TRSVINHASSTGNSVAMSDGLEFCS 207
            T SV N ASS+ + V    GL+ C+
Sbjct: 1347 TASVFNQASSSASHVGPHRGLQLCA 1371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,160,072
Number of Sequences: 59808
Number of extensions: 176888
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)