Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F07
         (282 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.       29   3.6  
AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 1...    29   3.6  
AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens ...    29   3.6  
L03155-1|AAA52927.1|  128|Homo sapiens immunoglobulin gamma-chai...    27   8.4  
L03151-1|AAA52923.1|  131|Homo sapiens immunoglobulin gamma-chai...    27   8.4  

>BC008596-1|AAH08596.1|  336|Homo sapiens TMEM19 protein protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 57  IKMVSKILIISMIVCTVNAAVWI 125
           IKM++ I+I+S+I+C ++ A WI
Sbjct: 13  IKMITNIVILSLIIC-ISLAFWI 34


>AK223148-1|BAD96868.1|  336|Homo sapiens transmembrane protein 19
           variant protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 57  IKMVSKILIISMIVCTVNAAVWI 125
           IKM++ I+I+S+I+C ++ A WI
Sbjct: 13  IKMITNIVILSLIIC-ISLAFWI 34


>AK001798-1|BAA91918.1|  298|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
           HYPOTHETICAL PROTEIN MJ0933. ).
          Length = 298

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/23 (47%), Positives = 19/23 (82%)
 Frame = +3

Query: 57  IKMVSKILIISMIVCTVNAAVWI 125
           IKM++ I+I+S+I+C ++ A WI
Sbjct: 13  IKMITNIVILSLIIC-ISLAFWI 34


>L03155-1|AAA52927.1|  128|Homo sapiens immunoglobulin gamma-chain,
           V region protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 207 GTELKPIGHCYRITC---GGSMIDYAS 278
           GTE KP G   +++C   GG+  DYAS
Sbjct: 5   GTEFKPPGSSVKVSCKASGGTFGDYAS 31


>L03151-1|AAA52923.1|  131|Homo sapiens immunoglobulin gamma-chain,
           V region protein.
          Length = 131

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +3

Query: 207 GTELKPIGHCYRITC---GGSMIDYAS 278
           GTE KP G   +++C   GG+  DYAS
Sbjct: 5   GTEFKPPGSSVKVSCKASGGTFGDYAS 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,072,192
Number of Sequences: 237096
Number of extensions: 841555
Number of successful extensions: 1214
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)