Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F07
         (282 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr...    26   4.8  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    26   4.8  
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr...    25   6.3  
U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical pr...    25   6.3  
U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical pr...    25   6.3  
U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical pr...    25   6.3  

>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
           protein C25F6.3 protein.
          Length = 1059

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +3

Query: 78  LIISMIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGG 257
           ++I+ I+C  N A WI    K     + + G  I E+N   P G   K +G    + CG 
Sbjct: 650 IVIASIMCVYNKADWIELATK-----SEEAGADILELNLSCPHGMGEKGMG----LACGQ 700

Query: 258 S 260
           S
Sbjct: 701 S 701


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 66  VSKILIISMIVCTVNAAVWIGALP 137
           V+ ILI+ +I+C +   V+   LP
Sbjct: 66  VAYILIVCLIICIIKTCVYFSTLP 89


>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
           protein C29A12.4 protein.
          Length = 1560

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 157 ANSFGFLGKAPIHTAALTVQTI 92
           +NSFGFLG  P H  +  V  +
Sbjct: 395 SNSFGFLGSIPKHNPSKEVNRV 416


>U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical
           protein W05H7.4a protein.
          Length = 605

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 62  NGVENFNNIHDCLYR*RCGMDRGLA*ETKG 151
           N   N+NN HD  +R   G +RG   +T+G
Sbjct: 472 NNRNNYNNHHDRDFRDNAGGNRGRFGDTEG 501


>U97552-4|AAX55684.1|  666|Caenorhabditis elegans Hypothetical
           protein W05H7.4e protein.
          Length = 666

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 62  NGVENFNNIHDCLYR*RCGMDRGLA*ETKG 151
           N   N+NN HD  +R   G +RG   +T+G
Sbjct: 533 NNRNNYNNHHDRDFRDNAGGNRGRFGDTEG 562


>U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical
           protein W05H7.4b protein.
          Length = 663

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 62  NGVENFNNIHDCLYR*RCGMDRGLA*ETKG 151
           N   N+NN HD  +R   G +RG   +T+G
Sbjct: 530 NNRNNYNNHHDRDFRDNAGGNRGRFGDTEG 559


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,846,906
Number of Sequences: 27780
Number of extensions: 135234
Number of successful extensions: 326
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)