Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_F07
         (282 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase...    28   0.84 
At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protei...    27   1.9  
At4g22090.1 68417.m03194 pectate lyase family protein similar to...    27   1.9  
At4g22080.1 68417.m03193 pectate lyase family protein similar to...    27   2.6  
At5g03880.1 68418.m00362 expressed protein                             26   4.5  
At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /...    26   4.5  
At3g58770.1 68416.m06550 expressed protein  ; expression support...    26   4.5  
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu...    26   4.5  
At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase...    26   4.5  
At5g30500.1 68418.m03751 galactinol synthase, putative similar t...    25   5.9  
At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SD...    25   7.8  

>At5g50950.1 68418.m06318 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 510

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 66  VSKILIIS-MIVCTVNAAVWIGALPKKPKELAHKEGCYIKEINDVVPFG----TELKPI 227
           +SK+L  S M+V ++N  +         K  AHKEGC +K  N ++ F     +E KPI
Sbjct: 433 ISKLLHESLMLVTSLNPKIGYDNAAAVAKR-AHKEGCTLKVNNKLLTFSSLNKSEFKPI 490


>At5g52300.1 68418.m06491 low-temperature-responsive 65 kD protein
           (LTI65) / desiccation-responsive protein 29B (RD29B)
           nearly identical to SP|Q04980 Low-temperature-induced 65
           kDa protein (Desiccation-responsive protein 29B)
           {Arabidopsis thaliana}
          Length = 619

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPI 227
           G +  KPK L+H     +    ++VP GT++ P+
Sbjct: 89  GGVTGKPKSLSHAGETNVPASEEIVPPGTKVFPV 122


>At4g22090.1 68417.m03194 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID 269
           G +   P  + H++G    + + +  FG+    I HCY  +C   +ID
Sbjct: 176 GKVRSSPTHVGHRKG---SDGDAITIFGSSNVWIDHCYLASCTDGLID 220


>At4g22080.1 68417.m03193 pectate lyase family protein similar to
           pectate lyase 2 GP:6606534 from [Musa acuminata]
          Length = 394

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 126 GALPKKPKELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID 269
           G +   P  + H++G    + + +  FG+    I HCY  +C   +ID
Sbjct: 176 GMVRSSPTHVGHRKG---SDGDAIAIFGSSNIWIDHCYLASCTDGLID 220


>At5g03880.1 68418.m00362 expressed protein
          Length = 339

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 102 TVNAAVWIGALPKKPKELAHKEGC-YIKEINDVV 200
           TV     +G  P+KP E+   EGC + +++ ++V
Sbjct: 128 TVKETAKVGPRPEKPIEIYEFEGCPFCRKVREMV 161


>At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650: CRAL/TRIO domain; similar to
           polyphosphoinositide binding protein Ssh2p (GI:2739046)
           [Glycine max]; similar to SEC14-like protein (GB:U82515)
           [D. discoideum]
          Length = 301

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 148 RNWHIRKAAT*KKSMMWYRLEQNSSPSDIATELPVEEA 261
           RNWH++KA    K  + +R++    P +I  E    EA
Sbjct: 53  RNWHVKKATKMLKETLKWRVQY--KPEEICWEEVAGEA 88


>At3g58770.1 68416.m06550 expressed protein  ; expression supported
           by MPSS
          Length = 771

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -2

Query: 260 ASSTGNSVAMSDGLEFCSKRYHIID 186
           ++STGN + + + +EF S++ H+I+
Sbjct: 398 SASTGNDLLLGNLVEFSSEKKHLIE 422


>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase PPIase
           (cyclophilin, cyclosporin A-binding protein) [Tomato]
           SWISS-PROT:P21568
          Length = 232

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 209 SKRYHIIDFFYVAAFLMCQFLWFL 138
           S+RY++I+       LMC + WF+
Sbjct: 209 SERYYLINIVVACMVLMCFWSWFV 232


>At2g47510.1 68415.m05930 fumarate hydratase, putative / fumarase,
           putative similar to SP|P55250 Fumarate hydratase,
           mitochondrial precursor (EC 4.2.1.2) (Fumarase)
           {Rhizopus oryzae}; contains Pfam profile PF00206: Lyase
          Length = 492

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 66  VSKILIIS-MIVCTVNAAVWIGALPKKPKELAHKEGCYIKE 185
           +SK+L  S M+V ++N  +         K+ AHKEGC +KE
Sbjct: 426 ISKLLHESLMLVTSLNPKIGYDNAAAVAKK-AHKEGCTLKE 465


>At5g30500.1 68418.m03751 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]
          Length = 328

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 132 LPKKPKELAHKEGCYIKEINDVVP 203
           +PK+ +++   +GC I+EI  V P
Sbjct: 65  VPKEHRQILVAQGCIIREIEPVYP 88


>At3g51680.1 68416.m05667 short-chain dehydrogenase/reductase (SDR)
           family protein similar to short-chain alcohol
           dehydrogenase GI:1877480 from [Tripsacum dactyloides]
          Length = 303

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 147 KELAHKEGCYIKEINDVVPFGTELKPIGHCYRITCGGSMID 269
           K  A + G Y   +N + PFG     + + +R T GG + D
Sbjct: 202 KNAACELGKYGIRVNCISPFGVATSMLVNAWRKTSGGDVED 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,427,988
Number of Sequences: 28952
Number of extensions: 124334
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 241748928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)